Analysis of interatomic Contacts of Structural Units in PDB entry:
6YM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YM3 entry

There are 4 chains in PDB entry 6YM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28ILE 358
A
 ILE 360LEU 405
B
 LEU 29ILE 358
B
 ILE 360LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6YM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 53Right-handed alpha
Helix 2
AA2
A
62 67Right-handed 310
Helix 3
AA3
A
94 105Right-handed alpha
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
148 169Right-handed alpha
Helix 6
AA6
A
222 228Right-handed alpha
Helix 7
AA7
A
234 241Right-handed alpha
Helix 8
AA8
A
248 269Right-handed alpha
Helix 9
AA9
A
283 292Right-handed alpha
Helix 10
AB1
A
389 405Right-handed alpha
Helix 11
AB2
B
35 53Right-handed alpha
Helix 12
AB3
B
62 67Right-handed 310
Helix 13
AB4
B
94 105Right-handed alpha
Helix 14
AB5
B
108 118Right-handed alpha
Helix 15
AB6
B
148 169Right-handed alpha
Helix 16
AB7
B
222 227Right-handed alpha
Helix 17
AB8
B
234 241Right-handed alpha
Helix 18
AB9
B
248 270Right-handed alpha
Helix 19
AC1
B
389 405Right-handed alpha
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There are 4 sheets in PDB entry 6YM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
135 136anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
189 197anti-parallel
Strand 5
A
178 186anti-parallel
Strand 6
A
87 93anti-parallel
Strand 7
A
69 77anti-parallel
Strand 8
B
69 77anti-parallel
Strand 9
B
87 93anti-parallel
Strand 10
B
178 186anti-parallel
Strand 11
B
189 197anti-parallel
Strand 12
B
142 147anti-parallel
Strand 13
B
135 136anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
208 212parallel
Strand 3
A
275 282anti-parallel
Strand 4
A
351 358anti-parallel
Strand 5
A
340 342anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
362 363anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
208 212parallel
Strand 3
B
275 282anti-parallel
Strand 4
B
351 358anti-parallel
Strand 5
B
340 342anti-parallel
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