Analysis of interatomic Contacts of Structural Units in PDB entry:
6YME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YME entry

There are 2 chains in PDB entry 6YME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 230
A
 THR 232MET 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
13 29Right-handed alpha
Helix 3
AA3
A
41 49Right-handed alpha
Helix 4
AA4
A
50 55Right-handed 310
Helix 5
AA5
A
69 88Right-handed alpha
Helix 6
AA6
A
98 111Right-handed alpha
Helix 7
AA7
A
122 125Right-handed 310
Helix 8
AA8
A
127 131Right-handed 310
Helix 9
AA9
A
135 140Right-handed alpha
Helix 10
AB1
A
156 168Right-handed alpha
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
206 212Right-handed alpha
Helix 13
AB4
A
230 234Right-handed 310
Helix 14
AB5
A
245 257Right-handed alpha
Helix 15
AB6
A
265 280Right-handed alpha
Helix 16
AB7
A
281 305Right-handed alpha
Helix 17
AB8
A
311 313Right-handed 310
Helix 18
AB9
A
324 327Right-handed 310
Helix 19
AC1
A
329 339Right-handed alpha
Helix 20
AC2
A
366 372Right-handed alpha
Helix 21
AC3
A
375 392Right-handed alpha
Helix 22
AC4
A
395 413Right-handed alpha
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There are 4 sheets in PDB entry 6YME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
342 343parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
63 64anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
224 228anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
171 174parallel
Strand 6
A
116 120parallel
Strand 7
A
142 146parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
345 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il