Analysis of interatomic Contacts of Structural Units in PDB entry:
6YMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YMG entry

There are 8 chains in PDB entry 6YMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 309
B
 MET 1LEU 309
C
 C 1 G 5
C
 G 7 A 11
D
 T 1 G 11
E
 C 1 G 5
E
 G 7 A 11
F
 T 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6YMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
33 39Right-handed alpha
Helix 3
AA3
A
40 42Right-handed 310
Helix 4
AA4
A
72 80Right-handed 310
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
111 113Right-handed 310
Helix 8
AA8
A
135 147Right-handed alpha
Helix 9
AA9
A
147 155Right-handed alpha
Helix 10
AB1
A
157 175Right-handed alpha
Helix 11
AB2
A
181 193Right-handed alpha
Helix 12
AB3
A
196 206Right-handed alpha
Helix 13
AB4
A
216 220Right-handed 310
Helix 14
AB5
A
227 231Right-handed 310
Helix 15
AB6
A
246 255Right-handed alpha
Helix 16
AB7
A
274 280Right-handed alpha
Helix 17
AB8
A
291 305Right-handed alpha
Helix 18
AB9
B
11 18Right-handed alpha
Helix 19
AC1
B
33 39Right-handed alpha
Helix 20
AC2
B
40 42Right-handed 310
Helix 21
AC3
B
72 80Right-handed 310
Helix 22
AC4
B
101 104Right-handed 310
Helix 23
AC5
B
105 110Right-handed alpha
Helix 24
AC6
B
111 113Right-handed 310
Helix 25
AC7
B
135 147Right-handed alpha
Helix 26
AC8
B
147 155Right-handed alpha
Helix 27
AC9
B
157 175Right-handed alpha
Helix 28
AD1
B
181 193Right-handed alpha
Helix 29
AD2
B
196 206Right-handed alpha
Helix 30
AD3
B
216 220Right-handed 310
Helix 31
AD4
B
227 231Right-handed 310
Helix 32
AD5
B
232 237Right-handed alpha
Helix 33
AD6
B
246 255Right-handed alpha
Helix 34
AD7
B
274 280Right-handed alpha
Helix 35
AD8
B
291 305Right-handed alpha
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There are 8 sheets in PDB entry 6YMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
67 70anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
55 62anti-parallel
Strand 4
A
47 52anti-parallel
Strand 5
A
3 7parallel
Strand 6
A
131 134anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
243 245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
266 268anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
85 92anti-parallel
Strand 3
B
67 70anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
85 92anti-parallel
Strand 3
B
55 62anti-parallel
Strand 4
B
47 52anti-parallel
Strand 5
B
3 7parallel
Strand 6
B
131 134anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
243 245anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
266 268anti-parallel
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