Analysis of interatomic Contacts of Structural Units in PDB entry:
6YMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YMO entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6YMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 230
B
 MET 1SER 230
C
 SER 616SER 616
C
 ALA 618LEU 620
D
 GLN 615SER 616
D
 ALA 618LEU 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
72 104Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 132Right-handed alpha
Helix 7
AA7
A
134 160Right-handed alpha
Helix 8
AA8
A
164 181Right-handed alpha
Helix 9
AA9
A
184 202Right-handed alpha
Helix 10
AB1
A
203 206Right-handed 310
Helix 11
AB2
A
210 229Right-handed alpha
Helix 12
AB3
B
2 16Right-handed alpha
Helix 13
AB4
B
18 31Right-handed alpha
Helix 14
AB5
B
37 69Right-handed alpha
Helix 15
AB6
B
72 104Right-handed alpha
Helix 16
AB7
B
104 109Right-handed alpha
Helix 17
AB8
B
111 131Right-handed alpha
Helix 18
AB9
B
134 160Right-handed alpha
Helix 19
AC1
B
164 181Right-handed alpha
Helix 20
AC2
B
184 202Right-handed alpha
Helix 21
AC3
B
203 206Right-handed 310
Helix 22
AC4
B
210 229Right-handed alpha
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There are no sheets in PDB entry 6YMO
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