Analysis of interatomic Contacts of Structural Units in PDB entry:
6YMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YMY entry

There are 12 chains in PDB entry 6YMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 TRP 5SER 534
b
 ASP 16GLN 251
c
 THR 2VAL 269
d
 VAL 30VAL 146
e
 ALA 25SER 152
f
 GLU 47PRO 145
g
 ASN 3ALA 57
h
 VAL 28PHE 78
i
 THR 2GLU 53
j
 ASN 6ASP 83
k
 ASN 16ASP 129
m
 GLU 26ALA 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 6YMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
13 40Right-handed alpha
Helix 2
AA2
a
56 68Right-handed alpha
Helix 3
AA3
a
70 76Right-handed alpha
Helix 4
AA4
a
77 88Right-handed alpha
Helix 5
AA5
a
95 119Right-handed alpha
Helix 6
AA6
a
130 135Right-handed alpha
Helix 7
AA7
a
142 167Right-handed alpha
Helix 8
AA8
a
183 196Right-handed alpha
Helix 9
AA9
a
199 216Right-handed alpha
Helix 10
AB1
a
229 247Right-handed alpha
Helix 11
AB2
a
248 263Right-handed alpha
Helix 12
AB3
a
269 282Right-handed alpha
Helix 13
AB4
a
288 292Right-handed 310
Helix 14
AB5
a
298 306Right-handed alpha
Helix 15
AB6
a
312 330Right-handed alpha
Helix 16
AB7
a
335 360Right-handed alpha
Helix 17
AB8
a
363 367Right-handed 310
Helix 18
AB9
a
370 378Right-handed alpha
Helix 19
AC1
a
386 401Right-handed alpha
Helix 20
AC2
a
406 426Right-handed alpha
Helix 21
AC3
a
427 435Right-handed alpha
Helix 22
AC4
a
444 448Right-handed 310
Helix 23
AC5
a
449 477Right-handed alpha
Helix 24
AC6
a
480 484Right-handed 310
Helix 25
AC7
a
500 505Right-handed alpha
Helix 26
AC8
a
513 517Right-handed 310
Helix 27
AC9
b
30 65Right-handed alpha
Helix 28
AD1
b
78 83Right-handed alpha
Helix 29
AD2
b
83 106Right-handed alpha
Helix 30
AD3
b
240 251Right-handed alpha
Helix 31
AD4
c
5 9Right-handed 310
Helix 32
AD5
c
21 26Right-handed alpha
Helix 33
AD6
c
26 41Right-handed alpha
Helix 34
AD7
c
49 64Right-handed alpha
Helix 35
AD8
c
64 75Right-handed alpha
Helix 36
AD9
c
80 101Right-handed alpha
Helix 37
AE1
c
103 112Right-handed alpha
Helix 38
AE2
c
136 149Right-handed alpha
Helix 39
AE3
c
156 162Right-handed alpha
Helix 40
AE4
c
163 176Right-handed alpha
Helix 41
AE5
c
176 188Right-handed alpha
Helix 42
AE6
c
204 209Right-handed alpha
Helix 43
AE7
c
209 232Right-handed alpha
Helix 44
AE8
c
240 265Right-handed alpha
Helix 45
AE9
d
42 46Right-handed 310
Helix 46
AF1
d
66 76Right-handed alpha
Helix 47
AF2
e
27 32Right-handed alpha
Helix 48
AF3
e
42 47Right-handed alpha
Helix 49
AF4
e
48 57Right-handed alpha
Helix 50
AF5
e
65 78Right-handed alpha
Helix 51
AF6
e
91 116Right-handed alpha
Helix 52
AF7
e
131 139Right-handed alpha
Helix 53
AF8
f
49 60Right-handed alpha
Helix 54
AF9
f
66 78Right-handed alpha
Helix 55
AG1
f
84 97Right-handed alpha
Helix 56
AG2
f
101 114Right-handed alpha
Helix 57
AG3
f
117 128Right-handed alpha
Helix 58
AG4
f
130 136Right-handed alpha
Helix 59
AG5
f
139 144Right-handed alpha
Helix 60
AG6
g
5 13Right-handed alpha
Helix 61
AG7
g
18 22Right-handed 310
Helix 62
AG8
g
23 25Right-handed 310
Helix 63
AG9
g
26 41Right-handed alpha
Helix 64
AH1
g
42 47Right-handed alpha
Helix 65
AH2
g
47 54Right-handed alpha
Helix 66
AH3
h
48 58Right-handed alpha
Helix 67
AH4
h
58 75Right-handed alpha
Helix 68
AH5
i
10 13Right-handed 310
Helix 69
AH6
i
14 36Right-handed alpha
Helix 70
AH7
i
36 51Right-handed alpha
Helix 71
AH8
j
25 40Right-handed alpha
Helix 72
AH9
j
49 57Right-handed alpha
Helix 73
AI1
j
60 71Right-handed alpha
Helix 74
AI2
k
37 58Right-handed alpha
Helix 75
AI3
k
58 85Right-handed alpha
Helix 76
AI4
m
27 51Right-handed alpha
Helix 77
AI5
m
53 61Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6YMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
532 533first strand
Strand 2
d
109 110parallel
Strand 3
d
123 124anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
141 145first strand
Strand 2
b
126 130anti-parallel
Strand 3
b
115 121anti-parallel
Strand 4
b
175 181parallel
Strand 5
b
205 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
167 169first strand
Strand 2
b
236 238parallel
Strand 3
b
215 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
188 190first strand
Strand 2
b
195 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
98 99first strand
Strand 2
d
141 142parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il