Analysis of interatomic Contacts of Structural Units in PDB entry:
6YMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YMZ entry

There are 4 chains in PDB entry 6YMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 350
B
 SER 0ILE 350
C
 MET 1ILE 350
D
 SER 0ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 6YMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
37 49Right-handed alpha
Helix 3
AA3
A
63 75Right-handed alpha
Helix 4
AA4
A
86 100Right-handed alpha
Helix 5
AA5
A
112 133Right-handed alpha
Helix 6
AA6
A
167 177Right-handed alpha
Helix 7
AA7
A
195 208Right-handed alpha
Helix 8
AA8
A
260 272Right-handed alpha
Helix 9
AA9
A
288 298Right-handed alpha
Helix 10
AB1
A
307 310Right-handed 310
Helix 11
AB2
A
314 323Right-handed alpha
Helix 12
AB3
A
330 332Right-handed 310
Helix 13
AB4
A
333 345Right-handed alpha
Helix 14
AB5
B
12 26Right-handed alpha
Helix 15
AB6
B
37 49Right-handed alpha
Helix 16
AB7
B
63 75Right-handed alpha
Helix 17
AB8
B
86 99Right-handed alpha
Helix 18
AB9
B
112 133Right-handed alpha
Helix 19
AC1
B
167 177Right-handed alpha
Helix 20
AC2
B
195 208Right-handed alpha
Helix 21
AC3
B
260 272Right-handed alpha
Helix 22
AC4
B
288 298Right-handed alpha
Helix 23
AC5
B
314 323Right-handed alpha
Helix 24
AC6
B
330 332Right-handed 310
Helix 25
AC7
B
333 345Right-handed alpha
Helix 26
AC8
C
12 25Right-handed alpha
Helix 27
AC9
C
37 49Right-handed alpha
Helix 28
AD1
C
63 75Right-handed alpha
Helix 29
AD2
C
86 99Right-handed alpha
Helix 30
AD3
C
112 133Right-handed alpha
Helix 31
AD4
C
167 177Right-handed alpha
Helix 32
AD5
C
195 208Right-handed alpha
Helix 33
AD6
C
260 272Right-handed alpha
Helix 34
AD7
C
288 298Right-handed alpha
Helix 35
AD8
C
307 310Right-handed 310
Helix 36
AD9
C
314 322Right-handed alpha
Helix 37
AE1
C
330 332Right-handed 310
Helix 38
AE2
C
333 345Right-handed alpha
Helix 39
AE3
D
12 25Right-handed alpha
Helix 40
AE4
D
37 49Right-handed alpha
Helix 41
AE5
D
63 75Right-handed alpha
Helix 42
AE6
D
86 100Right-handed alpha
Helix 43
AE7
D
112 131Right-handed alpha
Helix 44
AE8
D
167 177Right-handed alpha
Helix 45
AE9
D
195 208Right-handed alpha
Helix 46
AF1
D
260 272Right-handed alpha
Helix 47
AF2
D
288 298Right-handed alpha
Helix 48
AF3
D
314 323Right-handed alpha
Helix 49
AF4
D
330 332Right-handed 310
Helix 50
AF5
D
333 345Right-handed alpha
Helix 51
AF6
E
12 25Right-handed alpha
Helix 52
AF7
E
37 49Right-handed alpha
Helix 53
AF8
E
64 75Right-handed alpha
Helix 54
AF9
E
87 99Right-handed alpha
Helix 55
AG1
E
112 133Right-handed alpha
Helix 56
AG2
E
167 177Right-handed alpha
Helix 57
AG3
E
195 208Right-handed alpha
Helix 58
AG4
E
260 272Right-handed alpha
Helix 59
AG5
E
288 298Right-handed alpha
Helix 60
AG6
E
314 322Right-handed alpha
Helix 61
AG7
E
330 332Right-handed 310
Helix 62
AG8
E
333 344Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 6YMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
4 9parallel
Strand 3
A
52 56parallel
Strand 4
A
79 83parallel
Strand 5
A
103 106parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
225 228parallel
Strand 3
A
185 190parallel
Strand 4
A
159 164parallel
Strand 5
A
276 280parallel
Strand 6
A
301 305parallel
Strand 7
A
327 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 240first strand
Strand 2
A
243 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 35first strand
Strand 2
B
4 9parallel
Strand 3
B
52 56parallel
Strand 4
B
79 83parallel
Strand 5
B
103 106parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
225 228parallel
Strand 3
B
185 190parallel
Strand 4
B
159 164parallel
Strand 5
B
276 280parallel
Strand 6
B
301 305parallel
Strand 7
B
327 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 240first strand
Strand 2
B
243 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 35first strand
Strand 2
C
4 9parallel
Strand 3
C
52 56parallel
Strand 4
C
79 83parallel
Strand 5
C
103 106parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 214first strand
Strand 2
C
225 228parallel
Strand 3
C
185 190parallel
Strand 4
C
159 164parallel
Strand 5
C
276 280parallel
Strand 6
C
301 305parallel
Strand 7
C
327 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 240first strand
Strand 2
C
243 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 35first strand
Strand 2
D
4 9parallel
Strand 3
D
52 56parallel
Strand 4
D
79 83parallel
Strand 5
D
103 106parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 214first strand
Strand 2
D
225 228parallel
Strand 3
D
185 190parallel
Strand 4
D
159 164parallel
Strand 5
D
276 280parallel
Strand 6
D
301 305parallel
Strand 7
D
327 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 240first strand
Strand 2
D
243 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 35first strand
Strand 2
E
4 9parallel
Strand 3
E
52 56parallel
Strand 4
E
79 83parallel
Strand 5
E
103 106parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
211 214first strand
Strand 2
E
225 228parallel
Strand 3
E
185 190parallel
Strand 4
E
159 164parallel
Strand 5
E
276 280parallel
Strand 6
E
301 305parallel
Strand 7
E
327 329parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
234 240first strand
Strand 2
E
243 249anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il