Analysis of interatomic Contacts of Structural Units in PDB entry:
6YN1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YN1 entry

There are 16 chains in PDB entry 6YN1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 16	LYS 118
B	GLU 35	ALA 124
C	ARG 40	GLU 133
D	ILE 26	GLY 101
E	PRO 459	PRO 487
F	THR 16	LYS 118
G	SER 36	SER 123
H	ARG 40	GLU 133
I	ILE 26	GLY 101
J	PRO 459	PRO 487
K	THR 16	LYS 118
L	SER 36	SER 123
M	HIS 39	GLU 133
N	ILE 26	PHE 100
O	PRO 459	PRO 487
P	LYS 15	ILE 111

There are138 helices in PDB entry 6YN1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed alpha
Helix 2	AA2	A	26	37	Right-handed alpha
Helix 3	AA3	A	45	73	Right-handed alpha
Helix 4	AA4	A	79	89	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	B	37	49	Right-handed alpha
Helix 8	AA8	B	56	84	Right-handed alpha
Helix 9	AA9	B	90	102	Right-handed alpha
Helix 10	AB1	B	103	122	Right-handed alpha
Helix 11	AB2	C	42	57	Right-handed alpha
Helix 12	AB3	C	63	79	Right-handed alpha
Helix 13	AB4	C	85	114	Right-handed alpha
Helix 14	AB5	C	120	132	Right-handed alpha
Helix 15	AB6	D	30	41	Right-handed alpha
Helix 16	AB7	D	49	76	Right-handed alpha
Helix 17	AB8	D	82	93	Right-handed alpha
Helix 18	AB9	F	17	21	Right-handed alpha
Helix 19	AC1	F	26	36	Right-handed alpha
Helix 20	AC2	F	45	73	Right-handed alpha
Helix 21	AC3	F	79	90	Right-handed alpha
Helix 22	AC4	F	90	97	Right-handed alpha
Helix 23	AC5	F	112	116	Right-handed 310
Helix 24	AC6	G	37	49	Right-handed alpha
Helix 25	AC7	G	55	84	Right-handed alpha
Helix 26	AC8	G	90	102	Right-handed alpha
Helix 27	AC9	G	103	122	Right-handed alpha
Helix 28	AD1	H	42	57	Right-handed alpha
Helix 29	AD2	H	63	79	Right-handed alpha
Helix 30	AD3	H	85	114	Right-handed alpha
Helix 31	AD4	H	120	132	Right-handed alpha
Helix 32	AD5	I	30	41	Right-handed alpha
Helix 33	AD6	I	49	76	Right-handed alpha
Helix 34	AD7	I	82	93	Right-handed alpha
Helix 35	AD8	K	17	21	Right-handed alpha
Helix 36	AD9	K	26	37	Right-handed alpha
Helix 37	AE1	K	45	73	Right-handed alpha
Helix 38	AE2	K	79	90	Right-handed alpha
Helix 39	AE3	K	90	97	Right-handed alpha
Helix 40	AE4	K	112	116	Right-handed 310
Helix 41	AE5	L	37	49	Right-handed alpha
Helix 42	AE6	L	55	84	Right-handed alpha
Helix 43	AE7	L	90	102	Right-handed alpha
Helix 44	AE8	L	103	122	Right-handed alpha
Helix 45	AE9	M	42	57	Right-handed alpha
Helix 46	AF1	M	63	79	Right-handed alpha
Helix 47	AF2	M	85	114	Right-handed alpha
Helix 48	AF3	M	120	132	Right-handed alpha
Helix 49	AF4	N	30	41	Right-handed alpha
Helix 50	AF5	N	49	76	Right-handed alpha
Helix 51	AF6	N	82	93	Right-handed alpha
Helix 52	AF7	P	16	22	Right-handed alpha
Helix 53	AF8	P	26	37	Right-handed alpha
Helix 54	AF9	P	45	73	Right-handed alpha
Helix 55	AG1	P	79	90	Right-handed alpha
Helix 56	AG2	P	90	97	Right-handed alpha
Helix 57	AG3	P	112	116	Right-handed 310
Helix 58	AG4	Q	37	49	Right-handed alpha
Helix 59	AG5	Q	55	84	Right-handed alpha
Helix 60	AG6	Q	90	102	Right-handed alpha
Helix 61	AG7	Q	103	123	Right-handed alpha
Helix 62	AG8	R	42	57	Right-handed alpha
Helix 63	AG9	R	63	79	Right-handed alpha
Helix 64	AH1	R	85	114	Right-handed alpha
Helix 65	AH2	R	120	132	Right-handed alpha
Helix 66	AH3	S	30	41	Right-handed alpha
Helix 67	AH4	S	49	76	Right-handed alpha
Helix 68	AH5	S	82	93	Right-handed alpha
Helix 69	AH6	U	16	21	Right-handed alpha
Helix 70	AH7	U	26	37	Right-handed alpha
Helix 71	AH8	U	45	73	Right-handed alpha
Helix 72	AH9	U	79	90	Right-handed alpha
Helix 73	AI1	U	90	97	Right-handed alpha
Helix 74	AI2	U	112	116	Right-handed 310
Helix 75	AI3	V	37	49	Right-handed alpha
Helix 76	AI4	V	55	84	Right-handed alpha
Helix 77	AI5	V	90	102	Right-handed alpha
Helix 78	AI6	V	103	122	Right-handed alpha
Helix 79	AI7	W	42	57	Right-handed alpha
Helix 80	AI8	W	63	79	Right-handed alpha
Helix 81	AI9	W	85	114	Right-handed alpha
Helix 82	AJ1	W	120	132	Right-handed alpha
Helix 83	AJ2	X	24	29	Right-handed 310
Helix 84	AJ3	X	30	41	Right-handed alpha
Helix 85	AJ4	X	49	76	Right-handed alpha
Helix 86	AJ5	X	82	93	Right-handed alpha
Helix 87	AJ6	Z	16	21	Right-handed alpha
Helix 88	AJ7	Z	26	37	Right-handed alpha
Helix 89	AJ8	Z	45	73	Right-handed alpha
Helix 90	AJ9	Z	79	89	Right-handed alpha
Helix 91	AK1	Z	90	97	Right-handed alpha
Helix 92	AK2	Z	112	116	Right-handed 310
Helix 93	AK3	a	37	49	Right-handed alpha
Helix 94	AK4	a	55	84	Right-handed alpha
Helix 95	AK5	a	90	102	Right-handed alpha
Helix 96	AK6	a	103	123	Right-handed alpha
Helix 97	AK7	b	42	57	Right-handed alpha
Helix 98	AK8	b	63	79	Right-handed alpha
Helix 99	AK9	b	85	114	Right-handed alpha
Helix 100	AL1	b	120	132	Right-handed alpha
Helix 101	AL2	c	25	29	Right-handed 310
Helix 102	AL3	c	30	41	Right-handed alpha
Helix 103	AL4	c	49	76	Right-handed alpha
Helix 104	AL5	c	82	93	Right-handed alpha
Helix 105	AL6	e	17	21	Right-handed alpha
Helix 106	AL7	e	26	37	Right-handed alpha
Helix 107	AL8	e	45	73	Right-handed alpha
Helix 108	AL9	e	79	90	Right-handed alpha
Helix 109	AM1	e	90	97	Right-handed alpha
Helix 110	AM2	e	112	116	Right-handed 310
Helix 111	AM3	f	37	49	Right-handed alpha
Helix 112	AM4	f	55	84	Right-handed alpha
Helix 113	AM5	f	90	102	Right-handed alpha
Helix 114	AM6	f	103	122	Right-handed alpha
Helix 115	AM7	g	42	57	Right-handed alpha
Helix 116	AM8	g	63	79	Right-handed alpha
Helix 117	AM9	g	85	114	Right-handed alpha
Helix 118	AN1	g	120	132	Right-handed alpha
Helix 119	AN2	h	30	41	Right-handed alpha
Helix 120	AN3	h	49	76	Right-handed alpha
Helix 121	AN4	h	82	93	Right-handed alpha
Helix 122	AN5	j	16	21	Right-handed alpha
Helix 123	AN6	j	26	37	Right-handed alpha
Helix 124	AN7	j	45	73	Right-handed alpha
Helix 125	AN8	j	79	89	Right-handed alpha
Helix 126	AN9	j	90	97	Right-handed alpha
Helix 127	AO1	j	112	116	Right-handed 310
Helix 128	AO2	k	37	49	Right-handed alpha
Helix 129	AO3	k	55	84	Right-handed alpha
Helix 130	AO4	k	90	102	Right-handed alpha
Helix 131	AO5	k	103	122	Right-handed alpha
Helix 132	AO6	l	42	57	Right-handed alpha
Helix 133	AO7	l	63	79	Right-handed alpha
Helix 134	AO8	l	85	114	Right-handed alpha
Helix 135	AO9	l	120	132	Right-handed alpha
Helix 136	AP1	m	30	41	Right-handed alpha
Helix 137	AP2	m	49	76	Right-handed alpha
Helix 138	AP3	m	82	93	Right-handed alpha

There are 40 sheets in PDB entry 6YN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	B	88	89	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	B	53	55	parallel
Strand 3	J	484	485	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	I	96	98	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	D	80	81	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	D	45	46	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	F	100	102	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	G	88	89	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	78	first strand
Strand 2	G	53	54	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	84	first strand
Strand 2	I	80	81	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	I	45	46	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	43	first strand
Strand 2	L	88	89	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	78	first strand
Strand 2	L	53	54	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	102	first strand
Strand 2	S	96	98	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	84	first strand
Strand 2	N	80	81	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	N	45	46	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	96	98	first strand
Strand 2	P	100	102	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	42	43	first strand
Strand 2	Q	88	89	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	77	78	first strand
Strand 2	Q	53	54	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	83	84	first strand
Strand 2	S	80	81	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	118	119	first strand
Strand 2	S	45	46	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	42	43	first strand
Strand 2	V	88	89	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	77	78	first strand
Strand 2	V	53	54	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	100	102	first strand
Strand 2	c	96	98	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	83	84	first strand
Strand 2	X	80	81	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	118	119	first strand
Strand 2	X	45	46	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	96	98	first strand
Strand 2	Z	100	102	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	42	43	first strand
Strand 2	a	88	89	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	77	78	first strand
Strand 2	a	53	54	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	83	84	first strand
Strand 2	c	80	81	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	118	119	first strand
Strand 2	c	45	46	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	42	43	first strand
Strand 2	f	88	89	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	77	78	first strand
Strand 2	f	53	54	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	100	102	first strand
Strand 2	m	96	98	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	83	84	first strand
Strand 2	h	80	81	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	118	119	first strand
Strand 2	h	45	46	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	96	98	first strand
Strand 2	j	100	102	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	42	43	first strand
Strand 2	k	88	89	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	77	78	first strand
Strand 2	k	53	54	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	83	84	first strand
Strand 2	m	80	81	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	118	119	first strand
Strand 2	m	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YN1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YN1