Analysis of interatomic Contacts of Structural Units in PDB entry:
6YN2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YN2 entry

There are 2 chains in PDB entry 6YN2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 311
B
 THR 2GLU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6YN2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
16 24Right-handed alpha
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
63 67Right-handed 310
Helix 5
AA5
A
93 106Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
159 168Right-handed alpha
Helix 8
AA8
A
168 177Right-handed alpha
Helix 9
AA9
A
179 184Right-handed alpha
Helix 10
AB1
A
184 189Right-handed alpha
Helix 11
AB2
A
195 204Right-handed alpha
Helix 12
AB3
A
205 207Right-handed 310
Helix 13
AB4
A
210 212Right-handed 310
Helix 14
AB5
A
213 222Right-handed alpha
Helix 15
AB6
A
230 246Right-handed alpha
Helix 16
AB7
A
262 271Right-handed alpha
Helix 17
AB8
A
286 290Right-handed 310
Helix 18
AB9
A
291 311Right-handed alpha
Helix 19
AC1
B
10 14Right-handed 310
Helix 20
AC2
B
16 22Right-handed alpha
Helix 21
AC3
B
56 61Right-handed 310
Helix 22
AC4
B
63 67Right-handed 310
Helix 23
AC5
B
93 106Right-handed alpha
Helix 24
AC6
B
121 133Right-handed alpha
Helix 25
AC7
B
159 168Right-handed alpha
Helix 26
AC8
B
168 177Right-handed alpha
Helix 27
AC9
B
179 184Right-handed alpha
Helix 28
AD1
B
184 189Right-handed alpha
Helix 29
AD2
B
195 204Right-handed alpha
Helix 30
AD3
B
205 207Right-handed 310
Helix 31
AD4
B
210 212Right-handed 310
Helix 32
AD5
B
213 222Right-handed alpha
Helix 33
AD6
B
230 246Right-handed alpha
Helix 34
AD7
B
262 271Right-handed alpha
Helix 35
AD8
B
286 290Right-handed 310
Helix 36
AD9
B
291 310Right-handed alpha
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There are 2 sheets in PDB entry 6YN2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
72 76anti-parallel
Strand 4
A
46 50parallel
Strand 5
A
114 119parallel
Strand 6
A
137 145parallel
Strand 7
A
252 259parallel
Strand 8
A
276 283parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
72 76anti-parallel
Strand 4
B
46 50parallel
Strand 5
B
114 120parallel
Strand 6
B
137 145parallel
Strand 7
B
252 259parallel
Strand 8
B
276 283parallel
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