Analysis of interatomic Contacts of Structural Units in PDB entry:
6YN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YN4 entry

There is 1 chain in PDB entry 6YN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35ASN 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6YN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 50Right-handed 310
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
84 90Right-handed alpha
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
131 134Right-handed 310
Helix 7
AA7
A
136 141Right-handed alpha
Helix 8
AA8
A
143 162Right-handed alpha
Helix 9
AA9
A
175 201Right-handed alpha
Helix 10
AB1
A
215 220Right-handed alpha
Helix 11
AB2
A
223 231Right-handed alpha
Helix 12
AB3
A
261 265Right-handed 310
Helix 13
AB4
A
268 279Right-handed alpha
Helix 14
AB5
A
282 284Right-handed 310
Helix 15
AB6
A
323 325Right-handed 310
Helix 16
AB7
A
356 370Right-handed alpha
Helix 17
AB8
A
379 383Right-handed 310
Helix 18
AB9
A
385 388Right-handed 310
Helix 19
AC1
A
389 399Right-handed alpha
Helix 20
AC2
A
415 420Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6YN4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
123 129parallel
Strand 4
A
165 169parallel
Strand 5
A
207 213parallel
Strand 6
A
233 237parallel
Strand 7
A
286 291parallel
Strand 8
A
374 378parallel
Strand 9
A
39 45parallel
Strand 10
A
66 74parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
350 353anti-parallel
Strand 4
A
340 345anti-parallel
Strand 5
A
331 335anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il