Analysis of interatomic Contacts of Structural Units in PDB entry:
6YN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YN7 entry

There are 4 chains in PDB entry 6YN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 450
B
 THR 2ARG 451
C
 ARG 3LYS 447
D
 ARG 3HIS 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 6YN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
35 42Right-handed alpha
Helix 4
AA4
A
47 51Right-handed 310
Helix 5
AA5
A
58 74Right-handed alpha
Helix 6
AA6
A
83 88Right-handed alpha
Helix 7
AA7
A
95 112Right-handed alpha
Helix 8
AA8
A
126 131Right-handed alpha
Helix 9
AA9
A
132 137Right-handed 310
Helix 10
AB1
A
138 156Right-handed alpha
Helix 11
AB2
A
157 159Right-handed 310
Helix 12
AB3
A
167 177Right-handed alpha
Helix 13
AB4
A
187 211Right-handed alpha
Helix 14
AB5
A
233 248Right-handed alpha
Helix 15
AB6
A
248 256Right-handed alpha
Helix 16
AB7
A
261 272Right-handed alpha
Helix 17
AB8
A
281 287Right-handed alpha
Helix 18
AB9
A
332 348Right-handed alpha
Helix 19
AC1
A
372 392Right-handed alpha
Helix 20
AC2
A
409 413Right-handed 310
Helix 21
AC3
A
433 448Right-handed alpha
Helix 22
AC4
B
19 24Right-handed alpha
Helix 23
AC5
B
28 32Right-handed 310
Helix 24
AC6
B
35 42Right-handed alpha
Helix 25
AC7
B
47 51Right-handed 310
Helix 26
AC8
B
58 74Right-handed alpha
Helix 27
AC9
B
83 88Right-handed alpha
Helix 28
AD1
B
95 112Right-handed alpha
Helix 29
AD2
B
126 131Right-handed alpha
Helix 30
AD3
B
132 137Right-handed 310
Helix 31
AD4
B
138 156Right-handed alpha
Helix 32
AD5
B
157 159Right-handed 310
Helix 33
AD6
B
167 177Right-handed alpha
Helix 34
AD7
B
187 211Right-handed alpha
Helix 35
AD8
B
233 248Right-handed alpha
Helix 36
AD9
B
248 256Right-handed alpha
Helix 37
AE1
B
261 272Right-handed alpha
Helix 38
AE2
B
281 287Right-handed alpha
Helix 39
AE3
B
332 348Right-handed alpha
Helix 40
AE4
B
372 392Right-handed alpha
Helix 41
AE5
B
409 416Right-handed 310
Helix 42
AE6
B
433 449Right-handed alpha
Helix 43
AE7
C
19 24Right-handed alpha
Helix 44
AE8
C
28 32Right-handed 310
Helix 45
AE9
C
35 42Right-handed alpha
Helix 46
AF1
C
47 51Right-handed 310
Helix 47
AF2
C
58 74Right-handed alpha
Helix 48
AF3
C
83 88Right-handed alpha
Helix 49
AF4
C
95 112Right-handed alpha
Helix 50
AF5
C
126 132Right-handed alpha
Helix 51
AF6
C
133 137Right-handed 310
Helix 52
AF7
C
138 156Right-handed alpha
Helix 53
AF8
C
157 159Right-handed 310
Helix 54
AF9
C
167 177Right-handed alpha
Helix 55
AG1
C
187 211Right-handed alpha
Helix 56
AG2
C
233 248Right-handed alpha
Helix 57
AG3
C
248 256Right-handed alpha
Helix 58
AG4
C
261 272Right-handed alpha
Helix 59
AG5
C
281 287Right-handed alpha
Helix 60
AG6
C
332 348Right-handed alpha
Helix 61
AG7
C
372 392Right-handed alpha
Helix 62
AG8
C
409 416Right-handed 310
Helix 63
AG9
C
433 447Right-handed alpha
Helix 64
AH1
D
19 24Right-handed alpha
Helix 65
AH2
D
28 32Right-handed 310
Helix 66
AH3
D
35 42Right-handed alpha
Helix 67
AH4
D
47 51Right-handed 310
Helix 68
AH5
D
58 73Right-handed alpha
Helix 69
AH6
D
83 88Right-handed alpha
Helix 70
AH7
D
95 112Right-handed alpha
Helix 71
AH8
D
126 131Right-handed alpha
Helix 72
AH9
D
132 137Right-handed 310
Helix 73
AI1
D
138 156Right-handed alpha
Helix 74
AI2
D
157 159Right-handed 310
Helix 75
AI3
D
167 177Right-handed alpha
Helix 76
AI4
D
187 211Right-handed alpha
Helix 77
AI5
D
233 248Right-handed alpha
Helix 78
AI6
D
251 256Right-handed alpha
Helix 79
AI7
D
261 272Right-handed alpha
Helix 80
AI8
D
281 287Right-handed alpha
Helix 81
AI9
D
332 348Right-handed alpha
Helix 82
AJ1
D
372 392Right-handed alpha
Helix 83
AJ2
D
409 413Right-handed 310
Helix 84
AJ3
D
433 446Right-handed alpha
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There are 9 sheets in PDB entry 6YN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
292 305anti-parallel
Strand 3
A
352 356parallel
Strand 4
A
396 402parallel
Strand 5
A
13 17parallel
Strand 6
A
77 81parallel
Strand 7
A
115 121parallel
Strand 8
A
161 166parallel
Strand 9
A
217 229parallel
Strand 10
A
292 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
430 432anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
77 81parallel
Strand 3
B
115 121parallel
Strand 4
B
161 166parallel
Strand 5
B
217 223parallel
Strand 6
B
292 296parallel
Strand 7
B
352 356parallel
Strand 8
B
396 402parallel
Strand 9
B
13 17parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
300 305parallel
Strand 3
B
314 316anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 423first strand
Strand 2
B
430 432anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
314 316first strand
Strand 2
C
292 305anti-parallel
Strand 3
C
352 356parallel
Strand 4
C
396 402parallel
Strand 5
C
13 17parallel
Strand 6
C
77 81parallel
Strand 7
C
115 121parallel
Strand 8
C
161 166parallel
Strand 9
C
217 229parallel
Strand 10
C
292 305parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
421 423first strand
Strand 2
C
430 432anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
314 316first strand
Strand 2
D
292 305anti-parallel
Strand 3
D
352 356parallel
Strand 4
D
396 402parallel
Strand 5
D
13 17parallel
Strand 6
D
77 81parallel
Strand 7
D
115 121parallel
Strand 8
D
161 166parallel
Strand 9
D
217 229parallel
Strand 10
D
292 305parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
421 423first strand
Strand 2
D
430 432anti-parallel
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