Analysis of interatomic Contacts of Structural Units in PDB entry:
6YNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YNV entry

There is 1 chain in PDB entry 6YNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
e
 LYS 27PRO 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6YNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
e
46 60Right-handed alpha
Helix 2
AA2
e
79 85Right-handed alpha
Helix 3
AA3
e
89 92Right-handed 310
Helix 4
AA4
e
97 101Right-handed alpha
Helix 5
AA5
e
145 148Right-handed 310
Helix 6
AA6
e
150 157Right-handed alpha
Helix 7
AA7
e
176 178Right-handed 310
Helix 8
AA8
e
179 184Right-handed alpha
Helix 9
AA9
e
209 219Right-handed alpha
Helix 10
AB1
e
243 258Right-handed alpha
Helix 11
AB2
e
305 310Right-handed alpha
Helix 12
AB3
e
348 368Right-handed alpha
Helix 13
AB4
e
413 425Right-handed alpha
Helix 14
AB5
e
430 437Right-handed alpha
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There are 8 sheets in PDB entry 6YNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
107 108first strand
Strand 2
e
65 68parallel
Strand 3
e
40 43parallel
Strand 4
e
135 137parallel
Strand 5
e
334 336parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
73 75first strand
Strand 2
e
94 96anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
112 116first strand
Strand 2
e
121 124anti-parallel
Strand 3
e
129 131anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
142 143first strand
Strand 2
e
301 302anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
162 164first strand
Strand 2
e
294 297parallel
Strand 3
e
188 194parallel
Strand 4
e
228 234parallel
Strand 5
e
260 263parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
265 271first strand
Strand 2
e
276 281anti-parallel
Strand 3
e
286 291anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
313 314first strand
Strand 2
e
318 319anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
380 387first strand
Strand 2
e
390 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il