Analysis of interatomic Contacts of Structural Units in PDB entry:
6YO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YO8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6YO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 230
B
 MET 1SER 230
C
 MET 1SER 230
D
 MET 1SER 230
E
 THR 519ALA 523
E
 LEU 525PRO 530
F
 THR 519ALA 523
F
 LEU 525PRO 530
G
 ILE 520ALA 523
G
 LEU 525PRO 530
H
 ILE 520ALA 523
H
 LEU 525PRO 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6YO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
72 104Right-handed alpha
Helix 5
AA5
A
111 132Right-handed alpha
Helix 6
AA6
A
137 160Right-handed alpha
Helix 7
AA7
A
164 181Right-handed alpha
Helix 8
AA8
A
184 202Right-handed alpha
Helix 9
AA9
A
203 206Right-handed 310
Helix 10
AB1
A
207 230Right-handed alpha
Helix 11
AB2
B
2 17Right-handed alpha
Helix 12
AB3
B
18 32Right-handed alpha
Helix 13
AB4
B
37 69Right-handed alpha
Helix 14
AB5
B
72 104Right-handed alpha
Helix 15
AB6
B
104 109Right-handed alpha
Helix 16
AB7
B
111 132Right-handed alpha
Helix 17
AB8
B
134 160Right-handed alpha
Helix 18
AB9
B
164 181Right-handed alpha
Helix 19
AC1
B
184 202Right-handed alpha
Helix 20
AC2
B
203 206Right-handed 310
Helix 21
AC3
B
207 230Right-handed alpha
Helix 22
AC4
C
4 16Right-handed alpha
Helix 23
AC5
C
18 31Right-handed alpha
Helix 24
AC6
C
37 69Right-handed alpha
Helix 25
AC7
C
78 104Right-handed alpha
Helix 26
AC8
C
111 132Right-handed alpha
Helix 27
AC9
C
137 160Right-handed alpha
Helix 28
AD1
C
164 181Right-handed alpha
Helix 29
AD2
C
184 202Right-handed alpha
Helix 30
AD3
C
203 206Right-handed 310
Helix 31
AD4
C
207 230Right-handed alpha
Helix 32
AD5
D
2 16Right-handed alpha
Helix 33
AD6
D
18 32Right-handed alpha
Helix 34
AD7
D
37 69Right-handed alpha
Helix 35
AD8
D
72 104Right-handed alpha
Helix 36
AD9
D
111 132Right-handed alpha
Helix 37
AE1
D
134 160Right-handed alpha
Helix 38
AE2
D
164 181Right-handed alpha
Helix 39
AE3
D
184 202Right-handed alpha
Helix 40
AE4
D
203 206Right-handed 310
Helix 41
AE5
D
208 230Right-handed alpha
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There are no sheets in PDB entry 6YO8
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