Analysis of interatomic Contacts of Structural Units in PDB entry:
6YO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YO9 entry

There are 2 chains in PDB entry 6YO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 4LYS 399
A
 ILE 2LYS 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6YO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 28Right-handed alpha
Helix 2
AA2
B
36 45Right-handed alpha
Helix 3
AA3
B
71 79Right-handed alpha
Helix 4
AA4
B
84 86Right-handed 310
Helix 5
AA5
B
92 96Right-handed 310
Helix 6
AA6
B
102 111Right-handed alpha
Helix 7
AA7
B
132 143Right-handed alpha
Helix 8
AA8
B
153 159Right-handed alpha
Helix 9
AA9
B
163 188Right-handed alpha
Helix 10
AB1
B
193 208Right-handed alpha
Helix 11
AB2
B
230 236Right-handed 310
Helix 12
AB3
B
277 298Right-handed alpha
Helix 13
AB4
B
303 319Right-handed alpha
Helix 14
AB5
A
9 28Right-handed alpha
Helix 15
AB6
A
36 45Right-handed alpha
Helix 16
AB7
A
71 81Right-handed alpha
Helix 17
AB8
A
84 86Right-handed 310
Helix 18
AB9
A
92 96Right-handed 310
Helix 19
AC1
A
102 110Right-handed alpha
Helix 20
AC2
A
110 115Right-handed alpha
Helix 21
AC3
A
132 143Right-handed alpha
Helix 22
AC4
A
153 159Right-handed alpha
Helix 23
AC5
A
163 188Right-handed alpha
Helix 24
AC6
A
193 208Right-handed alpha
Helix 25
AC7
A
230 236Right-handed 310
Helix 26
AC8
A
277 298Right-handed alpha
Helix 27
AC9
A
303 318Right-handed alpha
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There are 10 sheets in PDB entry 6YO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
66 70parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
31 34anti-parallel
Strand 5
B
121 124parallel
Strand 6
B
147 150parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
216 217anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 260first strand
Strand 2
B
263 273anti-parallel
Strand 3
B
397 399parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
359 362anti-parallel
Strand 3
B
377 381anti-parallel
Strand 4
B
386 388anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 367first strand
Strand 2
B
372 374anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
66 70parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
31 34anti-parallel
Strand 5
A
121 124parallel
Strand 6
A
147 150parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
216 217anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 260first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
397 399parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
359 362anti-parallel
Strand 4
A
377 381anti-parallel
Strand 5
A
386 388anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
372 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il