Analysis of interatomic Contacts of Structural Units in PDB entry:
6YOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YOM entry

There are 2 chains in PDB entry 6YOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 114TRP 598
B
 MET 115TRP 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6YOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 137Right-handed alpha
Helix 2
AA2
A
138 143Right-handed alpha
Helix 3
AA3
A
144 147Right-handed 310
Helix 4
AA4
A
150 156Right-handed 310
Helix 5
AA5
A
163 186Right-handed alpha
Helix 6
AA6
A
187 190Right-handed 310
Helix 7
AA7
A
192 206Right-handed alpha
Helix 8
AA8
A
214 220Right-handed alpha
Helix 9
AA9
A
220 226Right-handed alpha
Helix 10
AB1
A
232 248Right-handed alpha
Helix 11
AB2
A
249 257Right-handed alpha
Helix 12
AB3
A
260 274Right-handed alpha
Helix 13
AB4
A
291 300Right-handed 310
Helix 14
AB5
A
309 324Right-handed alpha
Helix 15
AB6
A
330 338Right-handed alpha
Helix 16
AB7
A
355 373Right-handed alpha
Helix 17
AB8
A
376 395Right-handed alpha
Helix 18
AB9
A
402 404Right-handed 310
Helix 19
AC1
A
411 414Right-handed 310
Helix 20
AC2
A
415 422Right-handed alpha
Helix 21
AC3
A
424 432Right-handed alpha
Helix 22
AC4
A
435 437Right-handed 310
Helix 23
AC5
A
438 450Right-handed alpha
Helix 24
AC6
A
469 474Right-handed 310
Helix 25
AC7
A
475 483Right-handed alpha
Helix 26
AC8
A
494 496Right-handed 310
Helix 27
AC9
A
514 518Right-handed 310
Helix 28
AD1
A
533 537Right-handed 310
Helix 29
AD2
A
558 576Right-handed alpha
Helix 30
AD3
A
583 588Right-handed alpha
Helix 31
AD4
B
129 137Right-handed alpha
Helix 32
AD5
B
138 143Right-handed alpha
Helix 33
AD6
B
144 147Right-handed 310
Helix 34
AD7
B
150 156Right-handed 310
Helix 35
AD8
B
163 186Right-handed alpha
Helix 36
AD9
B
187 190Right-handed 310
Helix 37
AE1
B
192 206Right-handed alpha
Helix 38
AE2
B
214 220Right-handed alpha
Helix 39
AE3
B
220 226Right-handed alpha
Helix 40
AE4
B
232 248Right-handed alpha
Helix 41
AE5
B
249 257Right-handed alpha
Helix 42
AE6
B
260 274Right-handed alpha
Helix 43
AE7
B
291 300Right-handed 310
Helix 44
AE8
B
309 324Right-handed alpha
Helix 45
AE9
B
330 338Right-handed alpha
Helix 46
AF1
B
355 373Right-handed alpha
Helix 47
AF2
B
376 395Right-handed alpha
Helix 48
AF3
B
402 404Right-handed 310
Helix 49
AF4
B
411 414Right-handed 310
Helix 50
AF5
B
415 420Right-handed alpha
Helix 51
AF6
B
421 423Right-handed 310
Helix 52
AF7
B
424 432Right-handed alpha
Helix 53
AF8
B
435 437Right-handed 310
Helix 54
AF9
B
438 450Right-handed alpha
Helix 55
AG1
B
469 474Right-handed 310
Helix 56
AG2
B
475 481Right-handed alpha
Helix 57
AG3
B
514 518Right-handed 310
Helix 58
AG4
B
533 537Right-handed 310
Helix 59
AG5
B
558 576Right-handed alpha
Helix 60
AG6
B
583 588Right-handed alpha
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There are 8 sheets in PDB entry 6YOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
124 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
347 352anti-parallel
Strand 3
A
519 521parallel
Strand 4
A
529 530anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
406 407anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
546 554anti-parallel
Strand 3
A
498 506anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
124 128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 342first strand
Strand 2
B
347 352anti-parallel
Strand 3
B
519 521parallel
Strand 4
B
529 530anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
406 407anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 460first strand
Strand 2
B
546 554anti-parallel
Strand 3
B
498 506anti-parallel
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