Analysis of interatomic Contacts of Structural Units in PDB entry:
6YON


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YON entry

There are 4 chains in PDB entry 6YON (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10PHE 314
B
 ALA 10PHE 314
C
 ALA 10PHE 314
D
 ALA 10PHE 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6YON. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 52Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
76 93Right-handed alpha
Helix 4
AA4
A
114 128Right-handed alpha
Helix 5
AA5
A
147 165Right-handed alpha
Helix 6
AA6
A
177 181Right-handed 310
Helix 7
AA7
A
184 189Right-handed alpha
Helix 8
AA8
A
190 195Right-handed 310
Helix 9
AA9
A
225 230Right-handed alpha
Helix 10
AB1
A
231 242Right-handed alpha
Helix 11
AB2
A
255 271Right-handed alpha
Helix 12
AB3
A
300 311Right-handed alpha
Helix 13
AB4
B
42 53Right-handed alpha
Helix 14
AB5
B
62 67Right-handed alpha
Helix 15
AB6
B
76 93Right-handed alpha
Helix 16
AB7
B
114 127Right-handed alpha
Helix 17
AB8
B
128 130Right-handed 310
Helix 18
AB9
B
147 166Right-handed alpha
Helix 19
AC1
B
177 181Right-handed 310
Helix 20
AC2
B
184 189Right-handed alpha
Helix 21
AC3
B
190 195Right-handed 310
Helix 22
AC4
B
225 231Right-handed alpha
Helix 23
AC5
B
231 241Right-handed alpha
Helix 24
AC6
B
255 271Right-handed alpha
Helix 25
AC7
B
300 311Right-handed alpha
Helix 26
AC8
C
42 53Right-handed alpha
Helix 27
AC9
C
62 67Right-handed alpha
Helix 28
AD1
C
76 93Right-handed alpha
Helix 29
AD2
C
114 128Right-handed alpha
Helix 30
AD3
C
147 165Right-handed alpha
Helix 31
AD4
C
184 189Right-handed alpha
Helix 32
AD5
C
190 194Right-handed 310
Helix 33
AD6
C
225 231Right-handed alpha
Helix 34
AD7
C
231 242Right-handed alpha
Helix 35
AD8
C
257 271Right-handed alpha
Helix 36
AD9
C
300 306Right-handed alpha
Helix 37
AE1
C
306 311Right-handed alpha
Helix 38
AE2
D
42 51Right-handed alpha
Helix 39
AE3
D
62 67Right-handed alpha
Helix 40
AE4
D
76 93Right-handed alpha
Helix 41
AE5
D
114 128Right-handed alpha
Helix 42
AE6
D
147 166Right-handed alpha
Helix 43
AE7
D
177 181Right-handed 310
Helix 44
AE8
D
184 189Right-handed alpha
Helix 45
AE9
D
190 194Right-handed 310
Helix 46
AF1
D
225 231Right-handed alpha
Helix 47
AF2
D
231 241Right-handed alpha
Helix 48
AF3
D
255 271Right-handed alpha
Helix 49
AF4
D
300 311Right-handed alpha
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There are 8 sheets in PDB entry 6YON. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
56 61parallel
Strand 3
A
96 101parallel
Strand 4
A
135 138parallel
Strand 5
A
172 174parallel
Strand 6
A
202 208parallel
Strand 7
A
245 250parallel
Strand 8
A
276 284parallel
Strand 9
A
17 20parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
56 61parallel
Strand 3
B
96 101parallel
Strand 4
B
135 138parallel
Strand 5
B
172 174parallel
Strand 6
B
202 208parallel
Strand 7
B
245 250parallel
Strand 8
B
276 284parallel
Strand 9
B
15 20parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
110 111anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
56 61parallel
Strand 3
C
96 101parallel
Strand 4
C
135 138parallel
Strand 5
C
171 175parallel
Strand 6
C
202 209parallel
Strand 7
C
245 251parallel
Strand 8
C
276 284parallel
Strand 9
C
15 20parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
110 111anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
56 61parallel
Strand 3
D
96 101parallel
Strand 4
D
135 138parallel
Strand 5
D
172 175parallel
Strand 6
D
202 207parallel
Strand 7
D
245 249parallel
Strand 8
D
276 284parallel
Strand 9
D
15 20parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 107first strand
Strand 2
D
110 111anti-parallel
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