Analysis of interatomic Contacts of Structural Units in PDB entry:
6YPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YPC entry

There are 5 chains in PDB entry 6YPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 ALA 136SER 237
H
 THR 147ILE 181
T
 SER 269LEU 360
W
 MET 1GLN 89
I
 SER 2ALA 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6YPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
138 159Right-handed alpha
Helix 2
AA2
K
170 187Right-handed alpha
Helix 3
AA3
K
193 197Right-handed 310
Helix 4
AA4
K
201 212Right-handed alpha
Helix 5
AA5
H
150 172Right-handed alpha
Helix 6
AA6
T
274 282Right-handed alpha
Helix 7
AA7
T
282 289Right-handed alpha
Helix 8
AA8
T
294 316Right-handed alpha
Helix 9
AA9
T
322 331Right-handed alpha
Helix 10
AB1
T
336 348Right-handed alpha
Helix 11
AB2
T
349 360Right-handed alpha
Helix 12
AB3
W
2 15Right-handed alpha
Helix 13
AB4
W
37 68Right-handed alpha
Helix 14
AB5
W
74 89Right-handed alpha
Helix 15
AB6
I
3 15Right-handed alpha
Helix 16
AB7
I
20 39Right-handed alpha
Helix 17
AB8
I
41 55Right-handed alpha
Helix 18
AB9
I
59 71Right-handed alpha
Helix 19
AC1
I
78 87Right-handed alpha
Helix 20
AC2
I
103 117Right-handed alpha
Helix 21
AC3
I
118 121Right-handed 310
Helix 22
AC4
I
125 141Right-handed alpha
Helix 23
AC5
I
142 144Right-handed 310
Helix 24
AC6
I
145 157Right-handed alpha
Helix 25
AC7
I
164 177Right-handed alpha
Helix 26
AC8
I
182 199Right-handed alpha
Helix 27
AC9
I
201 211Right-handed alpha
Helix 28
AD1
I
216 223Right-handed alpha
Helix 29
AD2
I
227 241Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6YPC.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
214 217first strand
Strand 2
K
227 230anti-parallel
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