Analysis of interatomic Contacts of Structural Units in PDB entry:
6YPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YPE entry

There are 2 chains in PDB entry 6YPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 225ARG 429
B
 GLY 225ARG 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6YPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
367 371Right-handed 310
Helix 2
AA2
A
387 396Right-handed alpha
Helix 3
AA3
A
410 412Right-handed 310
Helix 4
AA4
B
367 371Right-handed 310
Helix 5
AA5
B
387 396Right-handed alpha
Helix 6
AA6
B
410 412Right-handed 310
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There are 4 sheets in PDB entry 6YPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 338first strand
Strand 2
A
325 330anti-parallel
Strand 3
A
313 320anti-parallel
Strand 4
A
252 260anti-parallel
Strand 5
A
374 382anti-parallel
Strand 6
A
228 232anti-parallel
Strand 7
A
421 424anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
293 296anti-parallel
Strand 3
A
278 286anti-parallel
Strand 4
A
268 275anti-parallel
Strand 5
A
352 355anti-parallel
Strand 6
A
240 243anti-parallel
Strand 7
A
414 417anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 338first strand
Strand 2
B
325 330anti-parallel
Strand 3
B
313 320anti-parallel
Strand 4
B
252 260anti-parallel
Strand 5
B
374 382anti-parallel
Strand 6
B
228 232anti-parallel
Strand 7
B
421 424anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
293 296anti-parallel
Strand 3
B
278 286anti-parallel
Strand 4
B
268 275anti-parallel
Strand 5
B
352 355anti-parallel
Strand 6
B
240 243anti-parallel
Strand 7
B
414 417anti-parallel
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