Analysis of interatomic Contacts of Structural Units in PDB entry:
6YPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YPT entry

There are 4 chains in PDB entry 6YPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 732LEU 876
B
 MET 1GLY 75
C
 LEU 732LEU 876
D
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6YPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
734 738Right-handed 310
Helix 2
AA2
A
749 753Right-handed alpha
Helix 3
AA3
A
782 793Right-handed alpha
Helix 4
AA4
A
795 807Right-handed alpha
Helix 5
AA5
A
808 812Right-handed 310
Helix 6
AA6
A
814 820Right-handed alpha
Helix 7
AA7
A
823 835Right-handed alpha
Helix 8
AA8
B
22 34Right-handed alpha
Helix 9
AA9
B
37 39Right-handed 310
Helix 10
AB1
B
56 60Right-handed 310
Helix 11
AB2
C
749 753Right-handed alpha
Helix 12
AB3
C
782 793Right-handed alpha
Helix 13
AB4
C
795 807Right-handed alpha
Helix 14
AB5
C
808 812Right-handed 310
Helix 15
AB6
C
814 820Right-handed alpha
Helix 16
AB7
C
823 835Right-handed alpha
Helix 17
AB8
D
22 34Right-handed alpha
Helix 18
AB9
D
37 39Right-handed 310
Helix 19
AC1
D
56 60Right-handed 310
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There are 6 sheets in PDB entry 6YPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 748first strand
Strand 2
A
765 769anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 849first strand
Strand 2
A
838 842anti-parallel
Strand 3
A
859 863parallel
Strand 4
A
869 872anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
742 748first strand
Strand 2
C
765 769anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
845 849first strand
Strand 2
C
838 842anti-parallel
Strand 3
C
859 863parallel
Strand 4
C
869 872anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il