Analysis of interatomic Contacts of Structural Units in PDB entry:
6YQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YQ4 entry

There are 3 chains in PDB entry 6YQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5LYS 494
B
 ASP 5LYS 494
C
 ASP 5PHE 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6YQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 59Right-handed 310
Helix 2
AA2
A
99 107Right-handed alpha
Helix 3
AA3
A
133 149Right-handed alpha
Helix 4
AA4
A
166 178Right-handed alpha
Helix 5
AA5
A
181 183Right-handed 310
Helix 6
AA6
A
184 192Right-handed alpha
Helix 7
AA7
A
211 224Right-handed alpha
Helix 8
AA8
A
239 245Right-handed alpha
Helix 9
AA9
A
258 280Right-handed alpha
Helix 10
AB1
A
297 317Right-handed alpha
Helix 11
AB2
A
321 326Right-handed 310
Helix 12
AB3
A
339 345Right-handed alpha
Helix 13
AB4
A
363 369Right-handed alpha
Helix 14
AB5
A
380 395Right-handed alpha
Helix 15
AB6
A
414 421Right-handed alpha
Helix 16
AB7
A
422 426Right-handed 310
Helix 17
AB8
A
449 462Right-handed alpha
Helix 18
AB9
A
481 494Right-handed alpha
Helix 19
AC1
B
56 59Right-handed 310
Helix 20
AC2
B
99 107Right-handed alpha
Helix 21
AC3
B
133 149Right-handed alpha
Helix 22
AC4
B
166 178Right-handed alpha
Helix 23
AC5
B
181 183Right-handed 310
Helix 24
AC6
B
184 192Right-handed alpha
Helix 25
AC7
B
211 224Right-handed alpha
Helix 26
AC8
B
239 245Right-handed alpha
Helix 27
AC9
B
246 249Right-handed 310
Helix 28
AD1
B
258 279Right-handed alpha
Helix 29
AD2
B
297 317Right-handed alpha
Helix 30
AD3
B
321 326Right-handed 310
Helix 31
AD4
B
339 344Right-handed alpha
Helix 32
AD5
B
345 347Right-handed 310
Helix 33
AD6
B
363 369Right-handed alpha
Helix 34
AD7
B
380 394Right-handed alpha
Helix 35
AD8
B
414 422Right-handed alpha
Helix 36
AD9
B
423 426Right-handed 310
Helix 37
AE1
B
449 462Right-handed alpha
Helix 38
AE2
B
481 494Right-handed alpha
Helix 39
AE3
C
56 59Right-handed 310
Helix 40
AE4
C
99 108Right-handed alpha
Helix 41
AE5
C
133 150Right-handed alpha
Helix 42
AE6
C
166 178Right-handed alpha
Helix 43
AE7
C
181 183Right-handed 310
Helix 44
AE8
C
184 191Right-handed alpha
Helix 45
AE9
C
211 224Right-handed alpha
Helix 46
AF1
C
239 246Right-handed alpha
Helix 47
AF2
C
258 279Right-handed alpha
Helix 48
AF3
C
297 317Right-handed alpha
Helix 49
AF4
C
321 326Right-handed 310
Helix 50
AF5
C
339 345Right-handed alpha
Helix 51
AF6
C
363 369Right-handed alpha
Helix 52
AF7
C
380 393Right-handed alpha
Helix 53
AF8
C
414 421Right-handed alpha
Helix 54
AF9
C
422 426Right-handed 310
Helix 55
AG1
C
449 462Right-handed alpha
Helix 56
AG2
C
481 493Right-handed alpha
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There are 10 sheets in PDB entry 6YQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
48 54anti-parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
73 76parallel
Strand 6
A
160 163parallel
Strand 7
A
202 206parallel
Strand 8
A
435 439parallel
Strand 9
A
465 469parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
252 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
335 338anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
26 36anti-parallel
Strand 3
B
48 54anti-parallel
Strand 4
B
110 114anti-parallel
Strand 5
B
73 76parallel
Strand 6
B
160 163parallel
Strand 7
B
202 206parallel
Strand 8
B
435 439parallel
Strand 9
B
465 469parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
97 98anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
253 256anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
335 338anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 21first strand
Strand 2
C
26 36anti-parallel
Strand 3
C
48 54anti-parallel
Strand 4
C
110 114anti-parallel
Strand 5
C
73 76parallel
Strand 6
C
160 163parallel
Strand 7
C
202 206parallel
Strand 8
C
435 439parallel
Strand 9
C
465 469parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 231first strand
Strand 2
C
253 256anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 330first strand
Strand 2
C
335 338anti-parallel
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