Analysis of interatomic Contacts of Structural Units in PDB entry:
6YQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YQ5 entry

There are 12 chains in PDB entry 6YQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5ALA 176
B
 PRO 5ALA 176
C
 PRO 5ALA 176
D
 PRO 5ALA 176
E
 PRO 5ALA 176
F
 PRO 5ALA 176
G
 PRO 5ALA 176
H
 PRO 5ALA 176
I
 PRO 5ALA 176
J
 PRO 5ALA 176
K
 PRO 5ALA 176
L
 PRO 5ALA 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 86Right-handed alpha
Helix 2
AA2
B
73 86Right-handed alpha
Helix 3
AA3
C
73 86Right-handed alpha
Helix 4
AA4
D
73 86Right-handed alpha
Helix 5
AA5
E
73 86Right-handed alpha
Helix 6
AA6
F
73 86Right-handed alpha
Helix 7
AA7
G
73 86Right-handed alpha
Helix 8
AA8
H
73 86Right-handed alpha
Helix 9
AA9
I
73 86Right-handed alpha
Helix 10
AB1
J
73 86Right-handed alpha
Helix 11
AB2
K
73 86Right-handed alpha
Helix 12
AB3
L
73 86Right-handed alpha
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There are 14 sheets in PDB entry 6YQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
138 142anti-parallel
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There are 25 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 40first strand
Strand 2
A
59 67anti-parallel
Strand 3
A
127 134anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
F
31 40anti-parallel
Strand 6
F
59 67anti-parallel
Strand 7
F
127 134anti-parallel
Strand 8
F
115 121anti-parallel
Strand 9
E
31 40anti-parallel
Strand 10
E
59 67anti-parallel
Strand 11
E
127 134anti-parallel
Strand 12
E
115 121anti-parallel
Strand 13
D
31 40anti-parallel
Strand 14
D
59 67anti-parallel
Strand 15
D
127 134anti-parallel
Strand 16
D
115 121anti-parallel
Strand 17
C
31 40anti-parallel
Strand 18
C
59 67anti-parallel
Strand 19
C
127 134anti-parallel
Strand 20
C
115 121anti-parallel
Strand 21
B
31 40anti-parallel
Strand 22
B
59 67anti-parallel
Strand 23
B
127 134anti-parallel
Strand 24
B
115 121anti-parallel
Strand 25
A
31 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
89 95anti-parallel
Strand 3
B
104 111anti-parallel
Strand 4
B
138 142anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 17first strand
Strand 2
C
89 95anti-parallel
Strand 3
C
104 111anti-parallel
Strand 4
C
138 142anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 17first strand
Strand 2
D
89 95anti-parallel
Strand 3
D
104 111anti-parallel
Strand 4
D
138 142anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 17first strand
Strand 2
E
89 95anti-parallel
Strand 3
E
104 111anti-parallel
Strand 4
E
138 142anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 17first strand
Strand 2
F
89 95anti-parallel
Strand 3
F
104 111anti-parallel
Strand 4
F
138 142anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 17first strand
Strand 2
G
89 95anti-parallel
Strand 3
G
104 111anti-parallel
Strand 4
G
138 142anti-parallel
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There are 25 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
31 40first strand
Strand 2
G
59 67anti-parallel
Strand 3
G
127 134anti-parallel
Strand 4
G
115 121anti-parallel
Strand 5
L
31 40anti-parallel
Strand 6
L
59 67anti-parallel
Strand 7
L
127 134anti-parallel
Strand 8
L
115 121anti-parallel
Strand 9
K
31 40anti-parallel
Strand 10
K
59 67anti-parallel
Strand 11
K
127 134anti-parallel
Strand 12
K
115 121anti-parallel
Strand 13
J
31 40anti-parallel
Strand 14
J
59 67anti-parallel
Strand 15
J
127 134anti-parallel
Strand 16
J
115 121anti-parallel
Strand 17
I
31 40anti-parallel
Strand 18
I
59 67anti-parallel
Strand 19
I
127 134anti-parallel
Strand 20
I
115 121anti-parallel
Strand 21
H
31 40anti-parallel
Strand 22
H
59 67anti-parallel
Strand 23
H
127 134anti-parallel
Strand 24
H
115 121anti-parallel
Strand 25
G
31 40anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 17first strand
Strand 2
H
89 95anti-parallel
Strand 3
H
104 111anti-parallel
Strand 4
H
138 142anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 17first strand
Strand 2
I
89 95anti-parallel
Strand 3
I
104 111anti-parallel
Strand 4
I
138 142anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 17first strand
Strand 2
J
89 95anti-parallel
Strand 3
J
104 111anti-parallel
Strand 4
J
138 142anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 17first strand
Strand 2
K
89 95anti-parallel
Strand 3
K
104 111anti-parallel
Strand 4
K
138 142anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 17first strand
Strand 2
L
89 95anti-parallel
Strand 3
L
104 111anti-parallel
Strand 4
L
138 142anti-parallel
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