Analysis of interatomic Contacts of Structural Units in PDB entry:
6YQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YQ7 entry

There are 2 chains in PDB entry 6YQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 476
B
 ALA 1SER 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6YQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
31 35Right-handed 310
Helix 4
AA4
A
41 48Right-handed alpha
Helix 5
AA5
A
48 54Right-handed alpha
Helix 6
AA6
A
92 95Right-handed 310
Helix 7
AA7
A
96 110Right-handed alpha
Helix 8
AA8
A
128 132Right-handed 310
Helix 9
AA9
A
133 137Right-handed 310
Helix 10
AB1
A
142 146Right-handed 310
Helix 11
AB2
A
157 164Right-handed alpha
Helix 12
AB3
A
180 199Right-handed alpha
Helix 13
AB4
A
207 211Right-handed 310
Helix 14
AB5
A
212 214Right-handed 310
Helix 15
AB6
A
215 224Right-handed alpha
Helix 16
AB7
A
235 240Right-handed alpha
Helix 17
AB8
A
241 245Right-handed 310
Helix 18
AB9
A
251 263Right-handed alpha
Helix 19
AC1
A
268 283Right-handed alpha
Helix 20
AC2
A
285 288Right-handed 310
Helix 21
AC3
A
300 305Right-handed alpha
Helix 22
AC4
A
307 321Right-handed alpha
Helix 23
AC5
A
330 334Right-handed 310
Helix 24
AC6
A
346 351Right-handed 310
Helix 25
AC7
A
356 376Right-handed alpha
Helix 26
AC8
A
378 382Right-handed 310
Helix 27
AC9
A
467 470Right-handed 310
Helix 28
AD1
B
2 7Right-handed alpha
Helix 29
AD2
B
15 20Right-handed alpha
Helix 30
AD3
B
31 35Right-handed 310
Helix 31
AD4
B
41 48Right-handed alpha
Helix 32
AD5
B
48 54Right-handed alpha
Helix 33
AD6
B
92 95Right-handed 310
Helix 34
AD7
B
96 110Right-handed alpha
Helix 35
AD8
B
128 132Right-handed 310
Helix 36
AD9
B
133 137Right-handed 310
Helix 37
AE1
B
142 146Right-handed 310
Helix 38
AE2
B
157 164Right-handed alpha
Helix 39
AE3
B
180 199Right-handed alpha
Helix 40
AE4
B
207 211Right-handed 310
Helix 41
AE5
B
212 214Right-handed 310
Helix 42
AE6
B
215 224Right-handed alpha
Helix 43
AE7
B
235 240Right-handed alpha
Helix 44
AE8
B
241 245Right-handed 310
Helix 45
AE9
B
251 263Right-handed alpha
Helix 46
AF1
B
268 283Right-handed alpha
Helix 47
AF2
B
285 288Right-handed 310
Helix 48
AF3
B
300 305Right-handed alpha
Helix 49
AF4
B
307 321Right-handed alpha
Helix 50
AF5
B
330 334Right-handed 310
Helix 51
AF6
B
346 351Right-handed 310
Helix 52
AF7
B
356 376Right-handed alpha
Helix 53
AF8
B
467 470Right-handed 310
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There are 10 sheets in PDB entry 6YQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
226 229parallel
Strand 3
A
202 205parallel
Strand 4
A
113 118parallel
Strand 5
A
59 62parallel
Strand 6
A
11 14parallel
Strand 7
A
324 328parallel
Strand 8
A
290 291parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
84 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
171 173anti-parallel
Strand 3
A
166 167anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
405 410anti-parallel
Strand 4
A
461 465anti-parallel
Strand 5
A
433 436anti-parallel
Strand 6
A
441 444anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 423first strand
Strand 2
A
451 455anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
226 229parallel
Strand 3
B
202 205parallel
Strand 4
B
113 118parallel
Strand 5
B
59 62parallel
Strand 6
B
11 14parallel
Strand 7
B
324 328parallel
Strand 8
B
290 291parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
84 90anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
171 173anti-parallel
Strand 3
B
166 167anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
393 398anti-parallel
Strand 3
B
405 410anti-parallel
Strand 4
B
461 465anti-parallel
Strand 5
B
433 436anti-parallel
Strand 6
B
441 444anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 423first strand
Strand 2
B
451 455anti-parallel
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