Analysis of interatomic Contacts of Structural Units in PDB entry:
6YQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YQQ entry

There is 1 chain in PDB entry 6YQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 84Right-handed alpha
Helix 2
AA2
A
103 120Right-handed alpha
Helix 3
AA3
A
125 133Right-handed alpha
Helix 4
AA4
A
140 149Right-handed alpha
Helix 5
AA5
A
160 164Right-handed 310
Helix 6
AA6
A
210 219Right-handed alpha
Helix 7
AA7
A
222 235Right-handed alpha
Helix 8
AA8
A
236 244Right-handed alpha
Helix 9
AA9
A
245 258Right-handed alpha
Helix 10
AB1
A
260 271Right-handed alpha
Helix 11
AB2
A
271 284Right-handed alpha
Helix 12
AB3
A
305 320Right-handed alpha
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There are 3 sheets in PDB entry 6YQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
88 94parallel
Strand 3
A
33 53anti-parallel
Strand 4
A
151 154anti-parallel
Strand 5
A
185 189anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
33 53anti-parallel
Strand 3
A
12 26anti-parallel
Strand 4
A
336 339anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
322 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il