Analysis of interatomic Contacts of Structural Units in PDB entry:
6YR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YR5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6YR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -3THR 231
O
 ARG 363ILE 366
O
 ALA 368VAL 371
B
 ALA -3THR 231
P
 ARG 364ILE 366
P
 ALA 368PRO 373
C
 ALA -3THR 231
Q
 THR 365ILE 366
Q
 ALA 368VAL 371
D
 GLY -4TRP 230
R
 THR 365ILE 366
R
 ALA 368VAL 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 6YR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
79 107Right-handed alpha
Helix 5
AA5
A
113 133Right-handed alpha
Helix 6
AA6
A
136 162Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 203Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
209 231Right-handed alpha
Helix 11
AB2
B
2 16Right-handed alpha
Helix 12
AB3
B
18 31Right-handed alpha
Helix 13
AB4
B
37 68Right-handed alpha
Helix 14
AB5
B
79 107Right-handed alpha
Helix 15
AB6
B
113 133Right-handed alpha
Helix 16
AB7
B
136 162Right-handed alpha
Helix 17
AB8
B
166 183Right-handed alpha
Helix 18
AB9
B
186 205Right-handed alpha
Helix 19
AC1
B
206 208Right-handed 310
Helix 20
AC2
B
209 231Right-handed alpha
Helix 21
AC3
C
2 16Right-handed alpha
Helix 22
AC4
C
18 31Right-handed alpha
Helix 23
AC5
C
37 66Right-handed alpha
Helix 24
AC6
C
79 107Right-handed alpha
Helix 25
AC7
C
113 135Right-handed alpha
Helix 26
AC8
C
136 162Right-handed alpha
Helix 27
AC9
C
166 183Right-handed alpha
Helix 28
AD1
C
186 203Right-handed alpha
Helix 29
AD2
C
204 208Right-handed 310
Helix 30
AD3
C
209 215Right-handed alpha
Helix 31
AD4
C
216 231Right-handed alpha
Helix 32
AD5
D
2 16Right-handed alpha
Helix 33
AD6
D
18 31Right-handed alpha
Helix 34
AD7
D
37 67Right-handed alpha
Helix 35
AD8
D
79 107Right-handed alpha
Helix 36
AD9
D
113 133Right-handed alpha
Helix 37
AE1
D
136 162Right-handed alpha
Helix 38
AE2
D
166 183Right-handed alpha
Helix 39
AE3
D
186 203Right-handed alpha
Helix 40
AE4
D
204 208Right-handed 310
Helix 41
AE5
D
209 230Right-handed alpha
Back to top of page
There are no sheets in PDB entry 6YR5
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il