Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YRA entry

There are 3 chains in PDB entry 6YRA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 2	ALA 580
A	TYR 6	HIS 696
D	ASN 2	ASP 48

There are 79 helices in PDB entry 6YRA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	31	Right-handed alpha
Helix 2	AA2	B	60	64	Right-handed 310
Helix 3	AA3	B	67	78	Right-handed alpha
Helix 4	AA4	B	162	171	Right-handed alpha
Helix 5	AA5	B	176	205	Right-handed alpha
Helix 6	AA6	B	205	230	Right-handed alpha
Helix 7	AA7	B	282	299	Right-handed alpha
Helix 8	AA8	B	305	310	Right-handed 310
Helix 9	AA9	B	336	354	Right-handed alpha
Helix 10	AB1	B	355	358	Right-handed 310
Helix 11	AB2	B	386	390	Right-handed 310
Helix 12	AB3	B	419	427	Right-handed alpha
Helix 13	AB4	B	532	536	Right-handed 310
Helix 14	AB5	B	537	547	Right-handed alpha
Helix 15	AB6	B	551	559	Right-handed alpha
Helix 16	AB7	B	570	577	Right-handed alpha
Helix 17	AB8	A	40	52	Right-handed alpha
Helix 18	AB9	A	58	63	Right-handed alpha
Helix 19	AC1	A	64	66	Right-handed 310
Helix 20	AC2	A	74	82	Right-handed alpha
Helix 21	AC3	A	98	103	Right-handed alpha
Helix 22	AC4	A	147	161	Right-handed alpha
Helix 23	AC5	A	177	190	Right-handed alpha
Helix 24	AC6	A	198	202	Right-handed 310
Helix 25	AC7	A	207	240	Right-handed alpha
Helix 26	AC8	A	263	267	Right-handed 310
Helix 27	AC9	A	274	284	Right-handed alpha
Helix 28	AD1	A	285	287	Right-handed 310
Helix 29	AD2	A	374	382	Right-handed alpha
Helix 30	AD3	A	399	410	Right-handed alpha
Helix 31	AD4	A	410	415	Right-handed alpha
Helix 32	AD5	A	417	442	Right-handed alpha
Helix 33	AD6	A	447	451	Right-handed 310
Helix 34	AD7	A	458	462	Right-handed 310
Helix 35	AD8	A	463	472	Right-handed alpha
Helix 36	AD9	A	483	492	Right-handed alpha
Helix 37	AE1	A	513	536	Right-handed alpha
Helix 38	AE2	A	570	589	Right-handed alpha
Helix 39	AE3	D	5	31	Right-handed alpha
Helix 40	AE4	D	60	64	Right-handed 310
Helix 41	AE5	D	66	78	Right-handed alpha
Helix 42	AE6	D	162	171	Right-handed alpha
Helix 43	AE7	D	176	205	Right-handed alpha
Helix 44	AE8	D	205	230	Right-handed alpha
Helix 45	AE9	D	282	299	Right-handed alpha
Helix 46	AF1	D	305	310	Right-handed 310
Helix 47	AF2	D	336	353	Right-handed alpha
Helix 48	AF3	D	354	358	Right-handed 310
Helix 49	AF4	D	385	390	Right-handed 310
Helix 50	AF5	D	419	427	Right-handed alpha
Helix 51	AF6	D	532	536	Right-handed 310
Helix 52	AF7	D	537	547	Right-handed alpha
Helix 53	AF8	D	551	558	Right-handed alpha
Helix 54	AF9	D	571	580	Right-handed alpha
Helix 55	AG1	C	40	56	Right-handed alpha
Helix 56	AG2	C	58	66	Right-handed alpha
Helix 57	AG3	C	74	82	Right-handed alpha
Helix 58	AG4	C	98	103	Right-handed alpha
Helix 59	AG5	C	147	161	Right-handed alpha
Helix 60	AG6	C	177	190	Right-handed alpha
Helix 61	AG7	C	200	202	Right-handed 310
Helix 62	AG8	C	207	240	Right-handed alpha
Helix 63	AG9	C	263	268	Right-handed 310
Helix 64	AH1	C	270	273	Right-handed 310
Helix 65	AH2	C	274	283	Right-handed alpha
Helix 66	AH3	C	284	287	Right-handed 310
Helix 67	AH4	C	363	367	Right-handed 310
Helix 68	AH5	C	374	382	Right-handed alpha
Helix 69	AH6	C	398	410	Right-handed alpha
Helix 70	AH7	C	410	415	Right-handed alpha
Helix 71	AH8	C	417	442	Right-handed alpha
Helix 72	AH9	C	447	451	Right-handed 310
Helix 73	AI1	C	458	462	Right-handed 310
Helix 74	AI2	C	463	472	Right-handed alpha
Helix 75	AI3	C	481	483	Right-handed 310
Helix 76	AI4	C	484	492	Right-handed alpha
Helix 77	AI5	C	513	532	Right-handed alpha
Helix 78	AI6	C	533	535	Right-handed 310
Helix 79	AI7	C	570	590	Right-handed alpha

There are 20 sheets in PDB entry 6YRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	114	124	anti-parallel
Strand 4	B	102	111	anti-parallel
Strand 5	B	87	90	anti-parallel
Strand 6	B	153	156	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	245	first strand
Strand 2	B	249	261	anti-parallel
Strand 3	B	264	268	anti-parallel
Strand 4	B	312	315	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	384	first strand
Strand 2	B	370	373	anti-parallel
Strand 3	B	462	465	anti-parallel
Strand 4	B	512	514	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	436	first strand
Strand 2	B	452	458	anti-parallel
Strand 3	B	519	523	anti-parallel
Strand 4	B	492	495	anti-parallel
Strand 5	B	503	505	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	7	12	anti-parallel
Strand 4	A	68	72	parallel
Strand 5	A	246	247	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	88	93	parallel
Strand 3	A	165	169	parallel
Strand 4	A	195	196	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	291	293	anti-parallel
Strand 4	A	452	454	parallel
Strand 5	A	476	479	parallel
Strand 6	A	689	693	anti-parallel
Strand 7	A	681	685	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	322	324	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	506	first strand
Strand 2	A	599	609	anti-parallel
Strand 3	A	543	552	anti-parallel
Strand 4	A	560	564	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	635	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	665	668	parallel
Strand 4	A	673	676	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	42	47	anti-parallel
Strand 3	D	114	124	anti-parallel
Strand 4	D	102	111	anti-parallel
Strand 5	D	87	90	anti-parallel
Strand 6	D	153	156	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	239	first strand
Strand 2	D	255	261	anti-parallel
Strand 3	D	264	268	anti-parallel
Strand 4	D	312	315	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	372	first strand
Strand 2	D	462	465	anti-parallel
Strand 3	D	512	514	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	436	first strand
Strand 2	D	452	458	anti-parallel
Strand 3	D	519	523	anti-parallel
Strand 4	D	492	495	anti-parallel
Strand 5	D	503	505	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	16	22	anti-parallel
Strand 3	C	7	12	anti-parallel
Strand 4	C	69	72	parallel
Strand 5	C	246	248	parallel
Strand 6	C	254	255	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	88	93	parallel
Strand 3	C	165	169	parallel
Strand 4	C	196	198	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	304	first strand
Strand 2	C	291	296	anti-parallel
Strand 3	C	452	454	parallel
Strand 4	C	476	479	parallel
Strand 5	C	689	693	anti-parallel
Strand 6	C	681	685	anti-parallel
Strand 7	C	658	661	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	322	324	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	506	first strand
Strand 2	C	599	609	anti-parallel
Strand 3	C	543	552	anti-parallel
Strand 4	C	560	564	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	636	first strand
Strand 2	C	645	651	anti-parallel
Strand 3	C	665	668	parallel
Strand 4	C	673	676	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YRA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRA