Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YRF entry

There are 4 chains in PDB entry 6YRF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	GLU 803
B	ASP 27	GLU 803
C	ASP 27	GLU 803
D	ASP 27	GLU 803

There are 56 helices in PDB entry 6YRF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	48	Right-handed alpha
Helix 2	AA2	A	60	89	Right-handed alpha
Helix 3	AA3	A	92	161	Right-handed alpha
Helix 4	AA4	A	170	203	Right-handed alpha
Helix 5	AA5	A	204	206	Right-handed 310
Helix 6	AA6	A	222	231	Right-handed alpha
Helix 7	AA7	A	237	250	Right-handed alpha
Helix 8	AA8	A	257	267	Right-handed alpha
Helix 9	AA9	A	276	305	Right-handed alpha
Helix 10	AB1	A	313	332	Right-handed alpha
Helix 11	AB2	A	333	336	Right-handed 310
Helix 12	AB3	A	407	412	Right-handed alpha
Helix 13	AB4	A	531	538	Right-handed alpha
Helix 14	AB5	B	30	49	Right-handed alpha
Helix 15	AB6	B	66	88	Right-handed alpha
Helix 16	AB7	B	92	147	Right-handed alpha
Helix 17	AB8	B	149	162	Right-handed alpha
Helix 18	AB9	B	169	199	Right-handed alpha
Helix 19	AC1	B	213	231	Right-handed alpha
Helix 20	AC2	B	238	250	Right-handed alpha
Helix 21	AC3	B	257	268	Right-handed alpha
Helix 22	AC4	B	276	306	Right-handed alpha
Helix 23	AC5	B	313	332	Right-handed alpha
Helix 24	AC6	B	333	336	Right-handed 310
Helix 25	AC7	B	406	412	Right-handed alpha
Helix 26	AC8	B	474	480	Right-handed alpha
Helix 27	AC9	B	531	538	Right-handed alpha
Helix 28	AD1	B	607	610	Right-handed 310
Helix 29	AD2	C	30	48	Right-handed alpha
Helix 30	AD3	C	60	89	Right-handed alpha
Helix 31	AD4	C	92	161	Right-handed alpha
Helix 32	AD5	C	170	203	Right-handed alpha
Helix 33	AD6	C	204	206	Right-handed 310
Helix 34	AD7	C	222	231	Right-handed alpha
Helix 35	AD8	C	237	250	Right-handed alpha
Helix 36	AD9	C	257	267	Right-handed alpha
Helix 37	AE1	C	276	305	Right-handed alpha
Helix 38	AE2	C	313	332	Right-handed alpha
Helix 39	AE3	C	333	336	Right-handed 310
Helix 40	AE4	C	407	412	Right-handed alpha
Helix 41	AE5	C	531	538	Right-handed alpha
Helix 42	AE6	D	30	49	Right-handed alpha
Helix 43	AE7	D	66	88	Right-handed alpha
Helix 44	AE8	D	92	147	Right-handed alpha
Helix 45	AE9	D	149	162	Right-handed alpha
Helix 46	AF1	D	169	199	Right-handed alpha
Helix 47	AF2	D	213	231	Right-handed alpha
Helix 48	AF3	D	238	250	Right-handed alpha
Helix 49	AF4	D	257	268	Right-handed alpha
Helix 50	AF5	D	276	306	Right-handed alpha
Helix 51	AF6	D	313	332	Right-handed alpha
Helix 52	AF7	D	333	336	Right-handed 310
Helix 53	AF8	D	406	412	Right-handed alpha
Helix 54	AF9	D	474	480	Right-handed alpha
Helix 55	AG1	D	531	538	Right-handed alpha
Helix 56	AG2	D	607	610	Right-handed 310

There are 42 sheets in PDB entry 6YRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	526	530	anti-parallel
Strand 3	A	510	515	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	495	502	anti-parallel
Strand 3	A	367	374	anti-parallel
Strand 4	A	380	386	anti-parallel
Strand 5	A	400	403	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	469	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	417	420	parallel
Strand 4	A	486	489	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	469	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	431	441	anti-parallel
Strand 4	A	356	361	anti-parallel
Strand 5	A	690	691	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	601	605	anti-parallel
Strand 3	A	665	670	anti-parallel
Strand 4	A	626	631	anti-parallel
Strand 5	A	636	640	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	597	first strand
Strand 2	A	675	685	anti-parallel
Strand 3	A	615	624	anti-parallel
Strand 4	A	645	656	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	A	722	726	anti-parallel
Strand 3	A	780	785	anti-parallel
Strand 4	A	745	750	anti-parallel
Strand 5	A	757	761	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	A	793	795	anti-parallel
Strand 3	A	741	742	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	738	first strand
Strand 2	A	767	770	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	526	530	anti-parallel
Strand 3	B	510	515	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	495	502	anti-parallel
Strand 3	B	367	374	anti-parallel
Strand 4	B	380	386	anti-parallel
Strand 5	B	400	404	anti-parallel
Strand 6	B	675	687	parallel
Strand 7	B	596	597	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	495	502	anti-parallel
Strand 3	B	367	374	anti-parallel
Strand 4	B	380	386	anti-parallel
Strand 5	B	400	404	anti-parallel
Strand 6	B	675	687	parallel
Strand 7	B	615	624	anti-parallel
Strand 8	B	645	656	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	469	first strand
Strand 2	B	444	454	anti-parallel
Strand 3	B	418	421	parallel
Strand 4	B	485	488	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	469	first strand
Strand 2	B	444	454	anti-parallel
Strand 3	B	431	441	anti-parallel
Strand 4	B	356	361	anti-parallel
Strand 5	B	690	691	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	393	394	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	575	first strand
Strand 2	B	601	605	anti-parallel
Strand 3	B	665	669	anti-parallel
Strand 4	B	627	631	anti-parallel
Strand 5	B	636	640	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	B	722	724	anti-parallel
Strand 3	B	779	784	anti-parallel
Strand 4	B	726	727	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	B	722	724	anti-parallel
Strand 3	B	779	784	anti-parallel
Strand 4	B	745	750	anti-parallel
Strand 5	B	755	761	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	708	first strand
Strand 2	B	716	717	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	770	first strand
Strand 2	B	734	736	anti-parallel
Strand 3	B	802	803	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	766	first strand
Strand 2	B	739	742	anti-parallel
Strand 3	B	794	795	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	526	530	anti-parallel
Strand 3	C	510	515	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	495	502	anti-parallel
Strand 3	C	367	374	anti-parallel
Strand 4	C	380	386	anti-parallel
Strand 5	C	400	403	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	469	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	417	420	parallel
Strand 4	C	486	489	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	469	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	431	441	anti-parallel
Strand 4	C	356	361	anti-parallel
Strand 5	C	690	691	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	575	first strand
Strand 2	C	601	605	anti-parallel
Strand 3	C	665	670	anti-parallel
Strand 4	C	626	631	anti-parallel
Strand 5	C	636	640	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	597	first strand
Strand 2	C	675	685	anti-parallel
Strand 3	C	615	624	anti-parallel
Strand 4	C	645	656	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	704	first strand
Strand 2	C	722	726	anti-parallel
Strand 3	C	780	785	anti-parallel
Strand 4	C	745	750	anti-parallel
Strand 5	C	757	761	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	793	795	anti-parallel
Strand 3	C	741	742	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	738	first strand
Strand 2	C	767	770	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	526	530	anti-parallel
Strand 3	D	510	515	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	348	first strand
Strand 2	D	495	502	anti-parallel
Strand 3	D	367	374	anti-parallel
Strand 4	D	380	386	anti-parallel
Strand 5	D	400	404	anti-parallel
Strand 6	D	675	687	parallel
Strand 7	D	596	597	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	348	first strand
Strand 2	D	495	502	anti-parallel
Strand 3	D	367	374	anti-parallel
Strand 4	D	380	386	anti-parallel
Strand 5	D	400	404	anti-parallel
Strand 6	D	675	687	parallel
Strand 7	D	615	624	anti-parallel
Strand 8	D	645	656	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	469	first strand
Strand 2	D	444	454	anti-parallel
Strand 3	D	418	421	parallel
Strand 4	D	485	488	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	469	first strand
Strand 2	D	444	454	anti-parallel
Strand 3	D	431	441	anti-parallel
Strand 4	D	356	361	anti-parallel
Strand 5	D	690	691	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	393	394	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	574	575	first strand
Strand 2	D	601	605	anti-parallel
Strand 3	D	665	669	anti-parallel
Strand 4	D	627	631	anti-parallel
Strand 5	D	636	640	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	703	first strand
Strand 2	D	722	724	anti-parallel
Strand 3	D	779	784	anti-parallel
Strand 4	D	726	727	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	703	first strand
Strand 2	D	722	724	anti-parallel
Strand 3	D	779	784	anti-parallel
Strand 4	D	745	750	anti-parallel
Strand 5	D	755	761	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	708	first strand
Strand 2	D	716	717	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	769	770	first strand
Strand 2	D	734	736	anti-parallel
Strand 3	D	802	803	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	766	first strand
Strand 2	D	739	742	anti-parallel
Strand 3	D	794	795	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YRF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRF