Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YRK entry

There are 2 chains in PDB entry 6YRK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	THR 813
B	GLN 59	ASN 576

There are 62 helices in PDB entry 6YRK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	58	Right-handed alpha
Helix 2	AA2	A	138	146	Right-handed alpha
Helix 3	AA3	A	159	164	Right-handed alpha
Helix 4	AA4	A	170	176	Right-handed alpha
Helix 5	AA5	A	183	188	Right-handed alpha
Helix 6	AA6	A	236	243	Right-handed alpha
Helix 7	AA7	A	243	252	Right-handed alpha
Helix 8	AA8	A	271	278	Right-handed alpha
Helix 9	AA9	A	289	299	Right-handed alpha
Helix 10	AB1	A	349	360	Right-handed alpha
Helix 11	AB2	A	438	444	Right-handed alpha
Helix 12	AB3	A	513	522	Right-handed alpha
Helix 13	AB4	A	548	561	Right-handed alpha
Helix 14	AB5	A	581	583	Right-handed 310
Helix 15	AB6	A	596	605	Right-handed 310
Helix 16	AB7	A	687	692	Right-handed alpha
Helix 17	AB8	A	694	696	Right-handed 310
Helix 18	AB9	A	717	719	Right-handed 310
Helix 19	AC1	A	751	755	Right-handed 310
Helix 20	AC2	B	99	103	Right-handed 310
Helix 21	AC3	B	111	124	Right-handed alpha
Helix 22	AC4	B	179	184	Right-handed alpha
Helix 23	AC5	B	207	213	Right-handed alpha
Helix 24	AC6	B	214	216	Right-handed 310
Helix 25	AC7	B	312	317	Right-handed alpha
Helix 26	AC8	B	326	333	Right-handed alpha
Helix 27	AC9	B	362	368	Right-handed alpha
Helix 28	AD1	B	369	370	Right-handed 310
Helix 29	AD2	B	371	376	Right-handed 310
Helix 30	AD3	B	383	393	Right-handed alpha
Helix 31	AD4	B	405	409	Right-handed 310
Helix 32	AD5	B	411	416	Right-handed 310
Helix 33	AD6	B	429	433	Right-handed 310
Helix 34	AD7	B	446	453	Right-handed alpha
Helix 35	AD8	B	505	509	Right-handed alpha
Helix 36	AD9	B	513	517	Right-handed 310
Helix 37	AE1	B	567	573	Right-handed 310
Helix 38	AE2	B	574	582	Right-handed alpha
Helix 39	AE3	B	604	608	Right-handed 310
Helix 40	AE4	B	633	641	Right-handed alpha
Helix 41	AE5	B	661	670	Right-handed alpha
Helix 42	AE6	B	699	706	Right-handed alpha
Helix 43	AE7	B	713	717	Right-handed 310
Helix 44	AE8	B	721	727	Right-handed alpha
Helix 45	AE9	B	739	744	Right-handed 310
Helix 46	AF1	B	758	768	Right-handed alpha
Helix 47	AF2	B	808	810	Right-handed 310
Helix 48	AF3	B	863	865	Right-handed 310
Helix 49	AF4	B	896	900	Right-handed 310
Helix 50	AF5	B	903	917	Right-handed alpha
Helix 51	AF6	B	934	939	Right-handed alpha
Helix 52	AF7	B	946	950	Right-handed 310
Helix 53	AF8	B	961	969	Right-handed alpha
Helix 54	AF9	B	1051	1056	Right-handed alpha
Helix 55	AG1	B	1059	1062	Right-handed 310
Helix 56	AG2	B	1081	1084	Right-handed 310
Helix 57	AG3	B	1119	1123	Right-handed 310
Helix 58	AG4	B	1133	1136	Right-handed 310
Helix 59	AG5	B	1137	1143	Right-handed alpha
Helix 60	AG6	B	1145	1153	Right-handed alpha
Helix 61	AG7	B	1192	1203	Right-handed alpha
Helix 62	AG8	B	1207	1211	Right-handed 310

There are 30 sheets in PDB entry 6YRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	52	53	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	72	first strand
Strand 2	A	75	82	anti-parallel
Strand 3	A	109	116	anti-parallel
Strand 4	A	124	132	anti-parallel
Strand 5	A	334	335	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	97	99	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	149	151	anti-parallel
Strand 3	A	498	502	parallel
Strand 4	A	404	408	anti-parallel
Strand 5	A	424	425	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	268	270	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	286	287	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	321	326	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	568	570	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	391	first strand
Strand 2	A	394	401	anti-parallel
Strand 3	A	541	547	anti-parallel
Strand 4	A	573	577	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	459	first strand
Strand 2	A	462	464	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	611	612	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	633	first strand
Strand 2	A	646	652	anti-parallel
Strand 3	A	655	662	anti-parallel
Strand 4	A	667	668	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	633	first strand
Strand 2	A	646	652	anti-parallel
Strand 3	A	655	662	anti-parallel
Strand 4	A	681	685	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	704	first strand
Strand 2	A	709	715	anti-parallel
Strand 3	A	735	743	anti-parallel
Strand 4	A	761	771	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	780	first strand
Strand 2	A	786	792	anti-parallel
Strand 3	A	797	805	anti-parallel
Strand 4	A	808	812	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	77	80	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	86	93	anti-parallel
Strand 3	B	128	133	anti-parallel
Strand 4	B	139	141	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	169	170	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	193	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	338	345	anti-parallel
Strand 4	B	353	361	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	300	301	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	867	869	anti-parallel
Strand 3	B	876	877	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	650	653	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	463	466	anti-parallel
Strand 3	B	485	492	anti-parallel
Strand 4	B	497	504	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	545	first strand
Strand 2	B	548	555	anti-parallel
Strand 3	B	692	698	anti-parallel
Strand 4	B	747	751	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	827	829	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	882	883	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	923	first strand
Strand 2	B	993	998	anti-parallel
Strand 3	B	1110	1112	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1013	1014	first strand
Strand 2	B	1020	1024	anti-parallel
Strand 3	B	1027	1031	anti-parallel
Strand 4	B	1044	1048	anti-parallel
Strand 5	B	1213	1215	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1064	1069	first strand
Strand 2	B	1075	1079	anti-parallel
Strand 3	B	1168	1171	anti-parallel
Strand 4	B	1217	1220	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1228	1230	first strand
Strand 2	B	1235	1237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YRK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRK