Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YRO entry

There are 5 chains in PDB entry 6YRO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 140	THR 343
A	GLN 140	THR 343
B	GLN 140	THR 343
C	GLN 140	THR 343
E	GLN 140	THR 343

There are 36 helices in PDB entry 6YRO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	151	156	Right-handed 310
Helix 2	AA2	D	157	163	Right-handed alpha
Helix 3	AA3	D	218	222	Right-handed 310
Helix 4	AA4	D	228	232	Right-handed 310
Helix 5	AA5	D	251	258	Right-handed alpha
Helix 6	AA6	D	259	263	Right-handed 310
Helix 7	AA7	D	266	275	Right-handed alpha
Helix 8	AA8	A	151	156	Right-handed 310
Helix 9	AA9	A	157	163	Right-handed alpha
Helix 10	AB1	A	218	222	Right-handed 310
Helix 11	AB2	A	228	232	Right-handed 310
Helix 12	AB3	A	251	259	Right-handed alpha
Helix 13	AB4	A	260	263	Right-handed 310
Helix 14	AB5	A	266	275	Right-handed alpha
Helix 15	AB6	B	151	156	Right-handed 310
Helix 16	AB7	B	157	163	Right-handed alpha
Helix 17	AB8	B	186	189	Right-handed 310
Helix 18	AB9	B	218	222	Right-handed 310
Helix 19	AC1	B	228	232	Right-handed 310
Helix 20	AC2	B	251	258	Right-handed alpha
Helix 21	AC3	B	259	263	Right-handed 310
Helix 22	AC4	B	266	275	Right-handed alpha
Helix 23	AC5	C	151	156	Right-handed 310
Helix 24	AC6	C	157	163	Right-handed alpha
Helix 25	AC7	C	218	222	Right-handed 310
Helix 26	AC8	C	228	232	Right-handed 310
Helix 27	AC9	C	251	259	Right-handed alpha
Helix 28	AD1	C	260	263	Right-handed 310
Helix 29	AD2	C	266	275	Right-handed alpha
Helix 30	AD3	E	151	156	Right-handed 310
Helix 31	AD4	E	157	163	Right-handed alpha
Helix 32	AD5	E	218	222	Right-handed 310
Helix 33	AD6	E	228	232	Right-handed 310
Helix 34	AD7	E	251	258	Right-handed alpha
Helix 35	AD8	E	259	263	Right-handed 310
Helix 36	AD9	E	266	275	Right-handed alpha

There are 10 sheets in PDB entry 6YRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	148	first strand
Strand 2	D	327	337	anti-parallel
Strand 3	D	308	321	anti-parallel
Strand 4	D	195	202	anti-parallel
Strand 5	D	278	287	anti-parallel
Strand 6	D	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	172	first strand
Strand 2	D	176	184	anti-parallel
Strand 3	D	292	301	anti-parallel
Strand 4	D	205	211	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	327	337	anti-parallel
Strand 3	A	308	321	anti-parallel
Strand 4	A	195	202	anti-parallel
Strand 5	A	278	287	anti-parallel
Strand 6	A	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	172	first strand
Strand 2	A	176	184	anti-parallel
Strand 3	A	292	301	anti-parallel
Strand 4	A	205	211	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	327	337	anti-parallel
Strand 3	B	308	321	anti-parallel
Strand 4	B	195	202	anti-parallel
Strand 5	B	278	287	anti-parallel
Strand 6	B	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	173	first strand
Strand 2	B	176	184	anti-parallel
Strand 3	B	292	301	anti-parallel
Strand 4	B	205	211	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	148	first strand
Strand 2	C	327	337	anti-parallel
Strand 3	C	308	321	anti-parallel
Strand 4	C	195	202	anti-parallel
Strand 5	C	278	287	anti-parallel
Strand 6	C	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	173	first strand
Strand 2	C	176	184	anti-parallel
Strand 3	C	292	301	anti-parallel
Strand 4	C	205	211	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	148	first strand
Strand 2	E	327	337	anti-parallel
Strand 3	E	308	321	anti-parallel
Strand 4	E	195	202	anti-parallel
Strand 5	E	278	287	anti-parallel
Strand 6	E	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	172	first strand
Strand 2	E	176	184	anti-parallel
Strand 3	E	292	301	anti-parallel
Strand 4	E	205	211	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YRO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRO