Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YRQ entry

There are 8 chains in PDB entry 6YRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 379	LEU 482
B	CYS 379	LEU 482
C	CYS 379	LEU 482
D	CYS 379	HIS 483
E	U 1	A 4
F	U 1	A 4
G	U 1	A 4
H	U 1	A 4

There are 8 helices in PDB entry 6YRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	446	463	Right-handed alpha
Helix 2	AA2	A	469	479	Right-handed alpha
Helix 3	AA3	B	446	463	Right-handed alpha
Helix 4	AA4	B	469	479	Right-handed alpha
Helix 5	AA5	C	446	463	Right-handed alpha
Helix 6	AA6	C	469	479	Right-handed alpha
Helix 7	AA7	D	446	463	Right-handed alpha
Helix 8	AA8	D	469	479	Right-handed alpha

There are 8 sheets in PDB entry 6YRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	386	first strand
Strand 2	A	389	400	anti-parallel
Strand 3	A	420	427	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	403	404	anti-parallel
Strand 3	A	434	438	anti-parallel
Strand 4	A	441	445	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	386	first strand
Strand 2	B	389	400	anti-parallel
Strand 3	B	420	427	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	403	404	anti-parallel
Strand 3	B	434	438	anti-parallel
Strand 4	B	441	445	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	386	first strand
Strand 2	C	389	400	anti-parallel
Strand 3	C	420	427	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	403	404	anti-parallel
Strand 3	C	434	438	anti-parallel
Strand 4	C	441	445	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	386	first strand
Strand 2	D	389	395	anti-parallel
Strand 3	D	422	427	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	413	first strand
Strand 2	D	402	404	anti-parallel
Strand 3	D	434	438	anti-parallel
Strand 4	D	441	445	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YRQ