Analysis of interatomic Contacts of Structural Units in PDB entry:
6YS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YS9 entry

There are 4 chains in PDB entry 6YS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15GLU 402
B
 ASP 15GLU 402
C
 ASP 15GLU 402
D
 ASP 15VAL 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 6YS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
21 43Right-handed alpha
Helix 3
AA3
A
56 63Right-handed alpha
Helix 4
AA4
A
65 75Right-handed alpha
Helix 5
AA5
A
94 99Right-handed alpha
Helix 6
AA6
A
110 117Right-handed alpha
Helix 7
AA7
A
117 134Right-handed alpha
Helix 8
AA8
A
137 140Right-handed 310
Helix 9
AA9
A
141 155Right-handed alpha
Helix 10
AB1
A
157 162Right-handed alpha
Helix 11
AB2
A
176 184Right-handed alpha
Helix 12
AB3
A
188 201Right-handed alpha
Helix 13
AB4
A
215 224Right-handed alpha
Helix 14
AB5
A
244 249Right-handed alpha
Helix 15
AB6
A
251 259Right-handed alpha
Helix 16
AB7
A
282 293Right-handed alpha
Helix 17
AB8
A
296 305Right-handed alpha
Helix 18
AB9
A
307 329Right-handed alpha
Helix 19
AC1
A
332 344Right-handed alpha
Helix 20
AC2
A
346 357Right-handed alpha
Helix 21
AC3
A
357 374Right-handed alpha
Helix 22
AC4
A
380 402Right-handed alpha
Helix 23
AC5
B
15 19Right-handed 310
Helix 24
AC6
B
21 43Right-handed alpha
Helix 25
AC7
B
56 63Right-handed alpha
Helix 26
AC8
B
65 76Right-handed alpha
Helix 27
AC9
B
94 99Right-handed alpha
Helix 28
AD1
B
110 117Right-handed alpha
Helix 29
AD2
B
117 134Right-handed alpha
Helix 30
AD3
B
137 140Right-handed 310
Helix 31
AD4
B
141 155Right-handed alpha
Helix 32
AD5
B
157 162Right-handed alpha
Helix 33
AD6
B
176 184Right-handed alpha
Helix 34
AD7
B
188 200Right-handed alpha
Helix 35
AD8
B
215 224Right-handed alpha
Helix 36
AD9
B
244 249Right-handed alpha
Helix 37
AE1
B
251 259Right-handed alpha
Helix 38
AE2
B
282 293Right-handed alpha
Helix 39
AE3
B
296 306Right-handed alpha
Helix 40
AE4
B
307 329Right-handed alpha
Helix 41
AE5
B
332 344Right-handed alpha
Helix 42
AE6
B
346 357Right-handed alpha
Helix 43
AE7
B
357 374Right-handed alpha
Helix 44
AE8
B
380 402Right-handed alpha
Helix 45
AE9
C
15 19Right-handed 310
Helix 46
AF1
C
21 42Right-handed alpha
Helix 47
AF2
C
56 64Right-handed alpha
Helix 48
AF3
C
65 76Right-handed alpha
Helix 49
AF4
C
94 99Right-handed alpha
Helix 50
AF5
C
110 117Right-handed alpha
Helix 51
AF6
C
117 134Right-handed alpha
Helix 52
AF7
C
141 155Right-handed alpha
Helix 53
AF8
C
157 162Right-handed alpha
Helix 54
AF9
C
176 184Right-handed alpha
Helix 55
AG1
C
188 201Right-handed alpha
Helix 56
AG2
C
215 225Right-handed alpha
Helix 57
AG3
C
244 249Right-handed alpha
Helix 58
AG4
C
251 259Right-handed alpha
Helix 59
AG5
C
282 293Right-handed alpha
Helix 60
AG6
C
296 305Right-handed alpha
Helix 61
AG7
C
307 329Right-handed alpha
Helix 62
AG8
C
332 344Right-handed alpha
Helix 63
AG9
C
346 357Right-handed alpha
Helix 64
AH1
C
357 374Right-handed alpha
Helix 65
AH2
C
380 402Right-handed alpha
Helix 66
AH3
D
15 19Right-handed 310
Helix 67
AH4
D
21 42Right-handed alpha
Helix 68
AH5
D
56 63Right-handed alpha
Helix 69
AH6
D
65 76Right-handed alpha
Helix 70
AH7
D
94 99Right-handed alpha
Helix 71
AH8
D
110 117Right-handed alpha
Helix 72
AH9
D
117 134Right-handed alpha
Helix 73
AI1
D
137 140Right-handed 310
Helix 74
AI2
D
141 155Right-handed alpha
Helix 75
AI3
D
157 162Right-handed alpha
Helix 76
AI4
D
176 184Right-handed alpha
Helix 77
AI5
D
188 201Right-handed alpha
Helix 78
AI6
D
215 225Right-handed alpha
Helix 79
AI7
D
244 249Right-handed alpha
Helix 80
AI8
D
251 259Right-handed alpha
Helix 81
AI9
D
282 293Right-handed alpha
Helix 82
AJ1
D
296 306Right-handed alpha
Helix 83
AJ2
D
307 329Right-handed alpha
Helix 84
AJ3
D
332 344Right-handed alpha
Helix 85
AJ4
D
346 357Right-handed alpha
Helix 86
AJ5
D
357 374Right-handed alpha
Helix 87
AJ6
D
380 401Right-handed alpha
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There are 8 sheets in PDB entry 6YS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
202 203anti-parallel
Strand 3
A
165 167anti-parallel
Strand 4
A
104 109parallel
Strand 5
A
50 55parallel
Strand 6
A
228 233parallel
Strand 7
A
266 271parallel
Strand 8
A
280 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
87 92anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
202 203anti-parallel
Strand 3
B
165 167anti-parallel
Strand 4
B
104 109parallel
Strand 5
B
50 55parallel
Strand 6
B
228 233parallel
Strand 7
B
266 271parallel
Strand 8
B
280 281anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
90 92anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 214first strand
Strand 2
C
202 203anti-parallel
Strand 3
C
165 167anti-parallel
Strand 4
C
104 109parallel
Strand 5
C
50 55parallel
Strand 6
C
228 233parallel
Strand 7
C
266 271parallel
Strand 8
C
280 281anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
87 92anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 214first strand
Strand 2
D
202 203anti-parallel
Strand 3
D
165 167anti-parallel
Strand 4
D
104 109parallel
Strand 5
D
50 55parallel
Strand 6
D
228 233parallel
Strand 7
D
266 271parallel
Strand 8
D
279 281anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 81first strand
Strand 2
D
87 92anti-parallel
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