Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YSB entry

There are 2 chains in PDB entry 6YSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 9GLU 349
A
 ILE 9GLU 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6YSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
25 27Right-handed 310
Helix 2
AA2
B
57 65Right-handed 310
Helix 3
AA3
B
132 138Right-handed 310
Helix 4
AA4
B
141 155Right-handed alpha
Helix 5
AA5
B
170 184Right-handed alpha
Helix 6
AA6
B
193 203Right-handed alpha
Helix 7
AA7
B
213 215Right-handed 310
Helix 8
AA8
B
217 226Right-handed alpha
Helix 9
AA9
B
238 246Right-handed alpha
Helix 10
AB1
B
260 265Right-handed 310
Helix 11
AB2
B
275 281Right-handed alpha
Helix 12
AB3
B
289 295Right-handed 310
Helix 13
AB4
B
296 310Right-handed alpha
Helix 14
AB5
B
325 335Right-handed alpha
Helix 15
AB6
A
25 27Right-handed 310
Helix 16
AB7
A
58 64Right-handed alpha
Helix 17
AB8
A
132 138Right-handed 310
Helix 18
AB9
A
141 155Right-handed alpha
Helix 19
AC1
A
170 184Right-handed alpha
Helix 20
AC2
A
193 203Right-handed alpha
Helix 21
AC3
A
213 215Right-handed 310
Helix 22
AC4
A
217 226Right-handed alpha
Helix 23
AC5
A
238 246Right-handed alpha
Helix 24
AC6
A
260 265Right-handed 310
Helix 25
AC7
A
275 281Right-handed alpha
Helix 26
AC8
A
289 295Right-handed 310
Helix 27
AC9
A
296 310Right-handed alpha
Helix 28
AD1
A
325 335Right-handed alpha
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There are 8 sheets in PDB entry 6YSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 16first strand
Strand 2
B
29 35anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
47 56anti-parallel
Strand 3
B
84 94anti-parallel
Strand 4
B
104 110anti-parallel
Strand 5
B
123 125anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
47 56anti-parallel
Strand 3
B
341 345anti-parallel
Strand 4
B
317 321parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
186 191parallel
Strand 3
B
162 165parallel
Strand 4
B
230 235parallel
Strand 5
B
249 257parallel
Strand 6
B
284 287parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
29 35anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
47 56anti-parallel
Strand 3
A
84 94anti-parallel
Strand 4
A
104 110anti-parallel
Strand 5
A
124 125anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
47 56anti-parallel
Strand 3
A
341 345anti-parallel
Strand 4
A
317 321parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
186 191parallel
Strand 3
A
162 165parallel
Strand 4
A
230 235parallel
Strand 5
A
249 257parallel
Strand 6
A
284 287parallel
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