Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YSG entry

There are 2 chains in PDB entry 6YSG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 1330
B	HIS 0	VAL 1330

There are129 helices in PDB entry 6YSG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	49	Right-handed alpha
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	66	80	Right-handed alpha
Helix 4	AA4	A	90	102	Right-handed alpha
Helix 5	AA5	A	103	105	Right-handed 310
Helix 6	AA6	A	117	122	Right-handed alpha
Helix 7	AA7	A	137	147	Right-handed alpha
Helix 8	AA8	A	159	172	Right-handed alpha
Helix 9	AA9	A	173	175	Right-handed 310
Helix 10	AB1	A	176	196	Right-handed alpha
Helix 11	AB2	A	197	213	Right-handed alpha
Helix 12	AB3	A	247	258	Right-handed alpha
Helix 13	AB4	A	262	267	Right-handed 310
Helix 14	AB5	A	279	285	Right-handed alpha
Helix 15	AB6	A	287	300	Right-handed alpha
Helix 16	AB7	A	314	322	Right-handed alpha
Helix 17	AB8	A	355	367	Right-handed alpha
Helix 18	AB9	A	374	378	Right-handed 310
Helix 19	AC1	A	393	405	Right-handed alpha
Helix 20	AC2	A	427	447	Right-handed alpha
Helix 21	AC3	A	475	489	Right-handed alpha
Helix 22	AC4	A	500	508	Right-handed alpha
Helix 23	AC5	A	529	536	Right-handed alpha
Helix 24	AC6	A	537	541	Right-handed 310
Helix 25	AC7	A	542	547	Right-handed alpha
Helix 26	AC8	A	596	609	Right-handed alpha
Helix 27	AC9	A	621	627	Right-handed 310
Helix 28	AD1	A	657	669	Right-handed alpha
Helix 29	AD2	A	686	705	Right-handed alpha
Helix 30	AD3	A	709	723	Right-handed alpha
Helix 31	AD4	A	724	727	Right-handed 310
Helix 32	AD5	A	734	738	Right-handed 310
Helix 33	AD6	A	739	760	Right-handed alpha
Helix 34	AD7	A	775	777	Right-handed 310
Helix 35	AD8	A	778	786	Right-handed alpha
Helix 36	AD9	A	790	794	Right-handed 310
Helix 37	AE1	A	797	806	Right-handed alpha
Helix 38	AE2	A	809	819	Right-handed alpha
Helix 39	AE3	A	821	849	Right-handed alpha
Helix 40	AE4	A	861	865	Right-handed 310
Helix 41	AE5	A	868	878	Right-handed alpha
Helix 42	AE6	A	883	903	Right-handed alpha
Helix 43	AE7	A	905	915	Right-handed alpha
Helix 44	AE8	A	930	934	Right-handed 310
Helix 45	AE9	A	950	971	Right-handed alpha
Helix 46	AF1	A	985	993	Right-handed alpha
Helix 47	AF2	A	994	1004	Right-handed alpha
Helix 48	AF3	A	1023	1028	Right-handed alpha
Helix 49	AF4	A	1039	1062	Right-handed alpha
Helix 50	AF5	A	1066	1069	Right-handed 310
Helix 51	AF6	A	1070	1084	Right-handed alpha
Helix 52	AF7	A	1086	1091	Right-handed alpha
Helix 53	AF8	A	1105	1113	Right-handed alpha
Helix 54	AF9	A	1117	1129	Right-handed alpha
Helix 55	AG1	A	1144	1153	Right-handed alpha
Helix 56	AG2	A	1173	1178	Right-handed alpha
Helix 57	AG3	A	1180	1188	Right-handed alpha
Helix 58	AG4	A	1211	1222	Right-handed alpha
Helix 59	AG5	A	1225	1234	Right-handed alpha
Helix 60	AG6	A	1236	1258	Right-handed alpha
Helix 61	AG7	A	1261	1273	Right-handed alpha
Helix 62	AG8	A	1275	1286	Right-handed alpha
Helix 63	AG9	A	1286	1303	Right-handed alpha
Helix 64	AH1	A	1309	1329	Right-handed alpha
Helix 65	AH2	B	31	49	Right-handed alpha
Helix 66	AH3	B	62	65	Right-handed 310
Helix 67	AH4	B	66	79	Right-handed alpha
Helix 68	AH5	B	90	102	Right-handed alpha
Helix 69	AH6	B	103	105	Right-handed 310
Helix 70	AH7	B	117	122	Right-handed alpha
Helix 71	AH8	B	130	134	Right-handed 310
Helix 72	AH9	B	137	145	Right-handed alpha
Helix 73	AI1	B	158	172	Right-handed alpha
Helix 74	AI2	B	173	175	Right-handed 310
Helix 75	AI3	B	176	196	Right-handed alpha
Helix 76	AI4	B	197	213	Right-handed alpha
Helix 77	AI5	B	247	257	Right-handed alpha
Helix 78	AI6	B	279	285	Right-handed alpha
Helix 79	AI7	B	287	300	Right-handed alpha
Helix 80	AI8	B	314	322	Right-handed alpha
Helix 81	AI9	B	355	367	Right-handed alpha
Helix 82	AJ1	B	374	379	Right-handed 310
Helix 83	AJ2	B	393	405	Right-handed alpha
Helix 84	AJ3	B	427	447	Right-handed alpha
Helix 85	AJ4	B	448	452	Right-handed 310
Helix 86	AJ5	B	475	489	Right-handed alpha
Helix 87	AJ6	B	500	508	Right-handed alpha
Helix 88	AJ7	B	528	536	Right-handed alpha
Helix 89	AJ8	B	537	540	Right-handed 310
Helix 90	AJ9	B	542	547	Right-handed alpha
Helix 91	AK1	B	596	609	Right-handed alpha
Helix 92	AK2	B	657	668	Right-handed alpha
Helix 93	AK3	B	686	698	Right-handed alpha
Helix 94	AK4	B	700	705	Right-handed alpha
Helix 95	AK5	B	709	722	Right-handed alpha
Helix 96	AK6	B	723	727	Right-handed 310
Helix 97	AK7	B	734	738	Right-handed 310
Helix 98	AK8	B	739	760	Right-handed alpha
Helix 99	AK9	B	775	777	Right-handed 310
Helix 100	AL1	B	778	786	Right-handed alpha
Helix 101	AL2	B	790	794	Right-handed 310
Helix 102	AL3	B	797	805	Right-handed alpha
Helix 103	AL4	B	809	820	Right-handed alpha
Helix 104	AL5	B	821	849	Right-handed alpha
Helix 105	AL6	B	855	859	Right-handed 310
Helix 106	AL7	B	869	876	Right-handed alpha
Helix 107	AL8	B	883	903	Right-handed alpha
Helix 108	AL9	B	905	916	Right-handed alpha
Helix 109	AM1	B	930	934	Right-handed 310
Helix 110	AM2	B	950	971	Right-handed alpha
Helix 111	AM3	B	985	993	Right-handed alpha
Helix 112	AM4	B	994	1004	Right-handed alpha
Helix 113	AM5	B	1023	1028	Right-handed alpha
Helix 114	AM6	B	1039	1063	Right-handed alpha
Helix 115	AM7	B	1066	1069	Right-handed 310
Helix 116	AM8	B	1070	1083	Right-handed alpha
Helix 117	AM9	B	1086	1091	Right-handed alpha
Helix 118	AN1	B	1105	1112	Right-handed alpha
Helix 119	AN2	B	1117	1130	Right-handed alpha
Helix 120	AN3	B	1144	1153	Right-handed alpha
Helix 121	AN4	B	1173	1179	Right-handed alpha
Helix 122	AN5	B	1180	1188	Right-handed alpha
Helix 123	AN6	B	1211	1222	Right-handed alpha
Helix 124	AN7	B	1225	1234	Right-handed alpha
Helix 125	AN8	B	1236	1257	Right-handed alpha
Helix 126	AN9	B	1261	1273	Right-handed alpha
Helix 127	AO1	B	1275	1286	Right-handed alpha
Helix 128	AO2	B	1286	1303	Right-handed alpha
Helix 129	AO3	B	1309	1329	Right-handed alpha

There are 17 sheets in PDB entry 6YSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	60	first strand
Strand 2	A	21	29	parallel
Strand 3	A	82	86	parallel
Strand 4	A	110	114	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	129	130	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	303	309	anti-parallel
Strand 3	A	272	278	parallel
Strand 4	A	338	341	parallel
Strand 5	A	370	372	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	528	first strand
Strand 2	A	559	566	anti-parallel
Strand 3	A	570	575	anti-parallel
Strand 4	A	454	459	parallel
Strand 5	A	614	618	parallel
Strand 6	A	649	654	parallel
Strand 7	A	670	675	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	520	521	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	761	762	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	923	first strand
Strand 2	A	939	941	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1132	first strand
Strand 2	A	1094	1096	anti-parallel
Strand 3	A	1033	1038	parallel
Strand 4	A	979	984	parallel
Strand 5	A	1157	1161	parallel
Strand 6	A	1195	1200	parallel
Strand 7	A	1207	1210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1010	first strand
Strand 2	A	1016	1021	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	60	first strand
Strand 2	B	21	29	parallel
Strand 3	B	82	86	parallel
Strand 4	B	110	113	parallel
Strand 5	B	125	126	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	303	309	anti-parallel
Strand 3	B	272	278	parallel
Strand 4	B	338	341	parallel
Strand 5	B	370	372	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	527	first strand
Strand 2	B	560	567	anti-parallel
Strand 3	B	570	575	anti-parallel
Strand 4	B	454	459	parallel
Strand 5	B	614	618	parallel
Strand 6	B	649	654	parallel
Strand 7	B	671	675	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	520	521	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	761	762	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	923	first strand
Strand 2	B	939	941	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1131	1132	first strand
Strand 2	B	1094	1096	anti-parallel
Strand 3	B	1033	1038	parallel
Strand 4	B	979	984	parallel
Strand 5	B	1157	1161	parallel
Strand 6	B	1195	1200	parallel
Strand 7	B	1207	1210	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1010	first strand
Strand 2	B	1016	1021	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YSG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSG