Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YSN entry

There are 4 chains in PDB entry 6YSN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	LYS 733
B	ARG 17	LYS 733
C	ARG 17	LYS 733
D	ARG 17	LYS 733

There are150 helices in PDB entry 6YSN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	98	105	Right-handed alpha
Helix 4	AA4	A	110	115	Right-handed alpha
Helix 5	AA5	A	144	153	Right-handed alpha
Helix 6	AA6	A	154	164	Right-handed alpha
Helix 7	AA7	A	178	184	Right-handed alpha
Helix 8	AA8	A	190	204	Right-handed alpha
Helix 9	AA9	A	205	211	Right-handed alpha
Helix 10	AB1	A	215	229	Right-handed alpha
Helix 11	AB2	A	229	234	Right-handed alpha
Helix 12	AB3	A	237	255	Right-handed alpha
Helix 13	AB4	A	256	259	Right-handed 310
Helix 14	AB5	A	265	270	Right-handed alpha
Helix 15	AB6	A	289	296	Right-handed alpha
Helix 16	AB7	A	304	316	Right-handed alpha
Helix 17	AB8	A	326	339	Right-handed alpha
Helix 18	AB9	A	340	347	Right-handed alpha
Helix 19	AC1	A	355	359	Right-handed 310
Helix 20	AC2	A	362	372	Right-handed alpha
Helix 21	AC3	A	373	380	Right-handed alpha
Helix 22	AC4	A	401	406	Right-handed alpha
Helix 23	AC5	A	407	422	Right-handed alpha
Helix 24	AC6	A	434	454	Right-handed alpha
Helix 25	AC7	A	465	469	Right-handed 310
Helix 26	AC8	A	473	491	Right-handed alpha
Helix 27	AC9	A	492	498	Right-handed 310
Helix 28	AD1	A	503	511	Right-handed alpha
Helix 29	AD2	A	522	540	Right-handed alpha
Helix 30	AD3	A	541	543	Right-handed 310
Helix 31	AD4	A	549	553	Right-handed 310
Helix 32	AD5	A	567	578	Right-handed alpha
Helix 33	AD6	A	584	589	Right-handed 310
Helix 34	AD7	A	596	614	Right-handed alpha
Helix 35	AD8	A	615	630	Right-handed alpha
Helix 36	AD9	A	634	649	Right-handed alpha
Helix 37	AE1	A	658	663	Right-handed alpha
Helix 38	AE2	A	704	731	Right-handed alpha
Helix 39	AE3	B	31	35	Right-handed 310
Helix 40	AE4	B	72	80	Right-handed alpha
Helix 41	AE5	B	98	105	Right-handed alpha
Helix 42	AE6	B	110	115	Right-handed alpha
Helix 43	AE7	B	144	153	Right-handed alpha
Helix 44	AE8	B	154	164	Right-handed alpha
Helix 45	AE9	B	178	184	Right-handed alpha
Helix 46	AF1	B	190	204	Right-handed alpha
Helix 47	AF2	B	205	211	Right-handed alpha
Helix 48	AF3	B	215	234	Right-handed alpha
Helix 49	AF4	B	237	255	Right-handed alpha
Helix 50	AF5	B	256	259	Right-handed 310
Helix 51	AF6	B	265	270	Right-handed alpha
Helix 52	AF7	B	289	296	Right-handed alpha
Helix 53	AF8	B	304	316	Right-handed alpha
Helix 54	AF9	B	326	339	Right-handed alpha
Helix 55	AG1	B	340	347	Right-handed alpha
Helix 56	AG2	B	355	359	Right-handed 310
Helix 57	AG3	B	362	372	Right-handed alpha
Helix 58	AG4	B	373	380	Right-handed alpha
Helix 59	AG5	B	401	406	Right-handed alpha
Helix 60	AG6	B	407	422	Right-handed alpha
Helix 61	AG7	B	434	454	Right-handed alpha
Helix 62	AG8	B	465	469	Right-handed 310
Helix 63	AG9	B	473	491	Right-handed alpha
Helix 64	AH1	B	492	498	Right-handed 310
Helix 65	AH2	B	503	511	Right-handed alpha
Helix 66	AH3	B	522	540	Right-handed alpha
Helix 67	AH4	B	541	543	Right-handed 310
Helix 68	AH5	B	549	553	Right-handed 310
Helix 69	AH6	B	567	578	Right-handed alpha
Helix 70	AH7	B	584	589	Right-handed 310
Helix 71	AH8	B	596	614	Right-handed alpha
Helix 72	AH9	B	615	630	Right-handed alpha
Helix 73	AI1	B	634	649	Right-handed alpha
Helix 74	AI2	B	658	663	Right-handed alpha
Helix 75	AI3	B	704	732	Right-handed alpha
Helix 76	AI4	C	31	35	Right-handed 310
Helix 77	AI5	C	72	80	Right-handed alpha
Helix 78	AI6	C	98	105	Right-handed alpha
Helix 79	AI7	C	110	115	Right-handed alpha
Helix 80	AI8	C	144	153	Right-handed alpha
Helix 81	AI9	C	154	164	Right-handed alpha
Helix 82	AJ1	C	178	184	Right-handed alpha
Helix 83	AJ2	C	190	204	Right-handed alpha
Helix 84	AJ3	C	205	211	Right-handed alpha
Helix 85	AJ4	C	215	234	Right-handed alpha
Helix 86	AJ5	C	237	255	Right-handed alpha
Helix 87	AJ6	C	256	259	Right-handed 310
Helix 88	AJ7	C	265	270	Right-handed alpha
Helix 89	AJ8	C	289	296	Right-handed alpha
Helix 90	AJ9	C	304	316	Right-handed alpha
Helix 91	AK1	C	326	339	Right-handed alpha
Helix 92	AK2	C	340	347	Right-handed alpha
Helix 93	AK3	C	355	359	Right-handed 310
Helix 94	AK4	C	362	372	Right-handed alpha
Helix 95	AK5	C	373	380	Right-handed alpha
Helix 96	AK6	C	401	406	Right-handed alpha
Helix 97	AK7	C	407	422	Right-handed alpha
Helix 98	AK8	C	434	454	Right-handed alpha
Helix 99	AK9	C	465	469	Right-handed 310
Helix 100	AL1	C	473	491	Right-handed alpha
Helix 101	AL2	C	492	498	Right-handed 310
Helix 102	AL3	C	503	511	Right-handed alpha
Helix 103	AL4	C	522	540	Right-handed alpha
Helix 104	AL5	C	541	543	Right-handed 310
Helix 105	AL6	C	549	553	Right-handed 310
Helix 106	AL7	C	567	578	Right-handed alpha
Helix 107	AL8	C	584	589	Right-handed 310
Helix 108	AL9	C	596	614	Right-handed alpha
Helix 109	AM1	C	615	630	Right-handed alpha
Helix 110	AM2	C	634	649	Right-handed alpha
Helix 111	AM3	C	658	663	Right-handed alpha
Helix 112	AM4	C	704	732	Right-handed alpha
Helix 113	AM5	D	31	35	Right-handed 310
Helix 114	AM6	D	72	80	Right-handed alpha
Helix 115	AM7	D	98	105	Right-handed alpha
Helix 116	AM8	D	110	115	Right-handed alpha
Helix 117	AM9	D	144	153	Right-handed alpha
Helix 118	AN1	D	154	163	Right-handed alpha
Helix 119	AN2	D	178	184	Right-handed alpha
Helix 120	AN3	D	190	204	Right-handed alpha
Helix 121	AN4	D	205	211	Right-handed alpha
Helix 122	AN5	D	215	229	Right-handed alpha
Helix 123	AN6	D	229	234	Right-handed alpha
Helix 124	AN7	D	237	255	Right-handed alpha
Helix 125	AN8	D	256	259	Right-handed 310
Helix 126	AN9	D	265	270	Right-handed alpha
Helix 127	AO1	D	289	296	Right-handed alpha
Helix 128	AO2	D	304	316	Right-handed alpha
Helix 129	AO3	D	326	339	Right-handed alpha
Helix 130	AO4	D	340	347	Right-handed alpha
Helix 131	AO5	D	355	359	Right-handed 310
Helix 132	AO6	D	362	372	Right-handed alpha
Helix 133	AO7	D	373	380	Right-handed alpha
Helix 134	AO8	D	401	406	Right-handed alpha
Helix 135	AO9	D	407	422	Right-handed alpha
Helix 136	AP1	D	434	454	Right-handed alpha
Helix 137	AP2	D	465	469	Right-handed 310
Helix 138	AP3	D	473	491	Right-handed alpha
Helix 139	AP4	D	492	498	Right-handed 310
Helix 140	AP5	D	503	511	Right-handed alpha
Helix 141	AP6	D	522	540	Right-handed alpha
Helix 142	AP7	D	541	543	Right-handed 310
Helix 143	AP8	D	549	553	Right-handed 310
Helix 144	AP9	D	567	578	Right-handed alpha
Helix 145	AQ1	D	584	589	Right-handed 310
Helix 146	AQ2	D	596	614	Right-handed alpha
Helix 147	AQ3	D	615	630	Right-handed alpha
Helix 148	AQ4	D	634	649	Right-handed alpha
Helix 149	AQ5	D	658	663	Right-handed alpha
Helix 150	AQ6	D	704	731	Right-handed alpha

There are 4 sheets in PDB entry 6YSN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	B	166	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	D	18	20	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	C	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	D	166	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YSN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSN