Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YSO entry

There are 2 chains in PDB entry 6YSO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 994
B	MET 1	LEU 319

There are 90 helices in PDB entry 6YSO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	8	17	Right-handed alpha
Helix 3	AA3	A	25	37	Right-handed alpha
Helix 4	AA4	A	48	57	Right-handed alpha
Helix 5	AA5	A	59	78	Right-handed alpha
Helix 6	AA6	A	78	84	Right-handed alpha
Helix 7	AA7	A	85	88	Right-handed 310
Helix 8	AA8	A	89	111	Right-handed alpha
Helix 9	AA9	A	114	121	Right-handed alpha
Helix 10	AB1	A	143	145	Right-handed 310
Helix 11	AB2	A	177	182	Right-handed alpha
Helix 12	AB3	A	226	229	Right-handed 310
Helix 13	AB4	A	230	242	Right-handed alpha
Helix 14	AB5	A	247	273	Right-handed alpha
Helix 15	AB6	A	289	307	Right-handed alpha
Helix 16	AB7	A	310	329	Right-handed alpha
Helix 17	AB8	A	337	342	Right-handed alpha
Helix 18	AB9	A	403	406	Right-handed 310
Helix 19	AC1	A	407	420	Right-handed alpha
Helix 20	AC2	A	439	452	Right-handed alpha
Helix 21	AC3	A	463	468	Right-handed alpha
Helix 22	AC4	A	469	477	Right-handed alpha
Helix 23	AC5	A	517	524	Right-handed alpha
Helix 24	AC6	A	538	554	Right-handed alpha
Helix 25	AC7	A	572	576	Right-handed 310
Helix 26	AC8	A	583	588	Right-handed alpha
Helix 27	AC9	A	606	617	Right-handed alpha
Helix 28	AD1	A	628	640	Right-handed alpha
Helix 29	AD2	A	655	661	Right-handed alpha
Helix 30	AD3	A	662	673	Right-handed alpha
Helix 31	AD4	A	680	694	Right-handed alpha
Helix 32	AD5	A	704	706	Right-handed 310
Helix 33	AD6	A	707	714	Right-handed alpha
Helix 34	AD7	A	724	731	Right-handed alpha
Helix 35	AD8	A	740	781	Right-handed alpha
Helix 36	AD9	A	788	798	Right-handed alpha
Helix 37	AE1	A	800	808	Right-handed alpha
Helix 38	AE2	A	813	818	Right-handed 310
Helix 39	AE3	A	831	858	Right-handed alpha
Helix 40	AE4	A	866	870	Right-handed 310
Helix 41	AE5	A	880	884	Right-handed 310
Helix 42	AE6	A	887	891	Right-handed 310
Helix 43	AE7	A	894	916	Right-handed alpha
Helix 44	AE8	A	926	929	Right-handed 310
Helix 45	AE9	A	930	947	Right-handed alpha
Helix 46	AF1	A	951	957	Right-handed alpha
Helix 47	AF2	A	962	994	Right-handed alpha
Helix 48	AF3	B	8	17	Right-handed alpha
Helix 49	AF4	B	25	37	Right-handed alpha
Helix 50	AF5	B	48	57	Right-handed alpha
Helix 51	AF6	B	59	78	Right-handed alpha
Helix 52	AF7	B	85	87	Right-handed 310
Helix 53	AF8	B	88	104	Right-handed alpha
Helix 54	AF9	B	114	121	Right-handed alpha
Helix 55	AG1	B	143	145	Right-handed 310
Helix 56	AG2	B	177	182	Right-handed alpha
Helix 57	AG3	B	226	229	Right-handed 310
Helix 58	AG4	B	230	242	Right-handed alpha
Helix 59	AG5	B	247	272	Right-handed alpha
Helix 60	AG6	B	289	307	Right-handed alpha
Helix 61	AG7	B	310	329	Right-handed alpha
Helix 62	AG8	B	337	342	Right-handed alpha
Helix 63	AG9	B	403	406	Right-handed 310
Helix 64	AH1	B	407	420	Right-handed alpha
Helix 65	AH2	B	439	453	Right-handed alpha
Helix 66	AH3	B	463	468	Right-handed alpha
Helix 67	AH4	B	469	477	Right-handed alpha
Helix 68	AH5	B	517	523	Right-handed alpha
Helix 69	AH6	B	538	553	Right-handed alpha
Helix 70	AH7	B	580	582	Right-handed 310
Helix 71	AH8	B	583	588	Right-handed alpha
Helix 72	AH9	B	604	617	Right-handed alpha
Helix 73	AI1	B	628	639	Right-handed alpha
Helix 74	AI2	B	655	661	Right-handed alpha
Helix 75	AI3	B	662	673	Right-handed alpha
Helix 76	AI4	B	680	692	Right-handed alpha
Helix 77	AI5	B	693	695	Right-handed 310
Helix 78	AI6	B	706	714	Right-handed alpha
Helix 79	AI7	B	724	730	Right-handed alpha
Helix 80	AI8	B	740	782	Right-handed alpha
Helix 81	AI9	B	788	799	Right-handed alpha
Helix 82	AJ1	B	800	807	Right-handed alpha
Helix 83	AJ2	B	814	819	Right-handed 310
Helix 84	AJ3	B	831	858	Right-handed alpha
Helix 85	AJ4	B	866	872	Right-handed 310
Helix 86	AJ5	B	887	892	Right-handed alpha
Helix 87	AJ6	B	893	915	Right-handed alpha
Helix 88	AJ7	B	930	950	Right-handed alpha
Helix 89	AJ8	B	951	957	Right-handed alpha
Helix 90	AJ9	B	964	990	Right-handed alpha

There are 12 sheets in PDB entry 6YSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	150	153	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	162	168	anti-parallel
Strand 6	A	207	208	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	174	176	anti-parallel
Strand 3	A	213	216	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	733	735	anti-parallel
Strand 3	A	716	720	parallel
Strand 4	A	697	702	parallel
Strand 5	A	345	350	parallel
Strand 6	A	620	624	parallel
Strand 7	A	675	677	parallel
Strand 8	A	652	654	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	592	600	anti-parallel
Strand 6	A	560	567	anti-parallel
Strand 7	A	511	516	anti-parallel
Strand 8	A	493	499	anti-parallel
Strand 9	A	480	488	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	376	384	anti-parallel
Strand 4	A	362	373	anti-parallel
Strand 5	A	592	600	anti-parallel
Strand 6	A	527	530	parallel
Strand 7	A	533	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	433	437	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	126	130	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	218	225	anti-parallel
Strand 5	B	162	168	anti-parallel
Strand 6	B	207	208	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	188	first strand
Strand 2	B	174	176	anti-parallel
Strand 3	B	213	216	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	733	735	anti-parallel
Strand 3	B	716	720	parallel
Strand 4	B	697	702	parallel
Strand 5	B	345	350	parallel
Strand 6	B	620	624	parallel
Strand 7	B	675	677	parallel
Strand 8	B	652	654	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	395	396	anti-parallel
Strand 3	B	376	384	anti-parallel
Strand 4	B	362	373	anti-parallel
Strand 5	B	591	600	anti-parallel
Strand 6	B	560	567	anti-parallel
Strand 7	B	511	516	anti-parallel
Strand 8	B	493	499	anti-parallel
Strand 9	B	480	485	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	395	396	anti-parallel
Strand 3	B	376	384	anti-parallel
Strand 4	B	362	373	anti-parallel
Strand 5	B	591	600	anti-parallel
Strand 6	B	525	530	parallel
Strand 7	B	533	536	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	428	first strand
Strand 2	B	433	437	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YSO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSO