Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YSP entry

There are 3 chains in PDB entry 6YSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 80TRP 390
B
 PRO 79TRP 390
C
 HIS 80VAL 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6YSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
A
94 114Right-handed alpha
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
157 162Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
169 178Right-handed alpha
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
215 231Right-handed alpha
Helix 10
AB1
A
247 258Right-handed alpha
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
276 287Right-handed alpha
Helix 13
AB4
A
295 301Right-handed alpha
Helix 14
AB5
A
312 317Right-handed 310
Helix 15
AB6
A
319 327Right-handed alpha
Helix 16
AB7
A
333 340Right-handed alpha
Helix 17
AB8
A
357 363Right-handed 310
Helix 18
AB9
A
367 389Right-handed alpha
Helix 19
AC1
B
89 93Right-handed 310
Helix 20
AC2
B
94 114Right-handed alpha
Helix 21
AC3
B
135 148Right-handed alpha
Helix 22
AC4
B
157 162Right-handed alpha
Helix 23
AC5
B
163 167Right-handed 310
Helix 24
AC6
B
169 179Right-handed alpha
Helix 25
AC7
B
192 201Right-handed alpha
Helix 26
AC8
B
215 231Right-handed alpha
Helix 27
AC9
B
247 258Right-handed alpha
Helix 28
AD1
B
270 274Right-handed 310
Helix 29
AD2
B
276 286Right-handed alpha
Helix 30
AD3
B
295 301Right-handed alpha
Helix 31
AD4
B
312 317Right-handed 310
Helix 32
AD5
B
319 328Right-handed alpha
Helix 33
AD6
B
333 340Right-handed alpha
Helix 34
AD7
B
357 363Right-handed 310
Helix 35
AD8
B
367 389Right-handed alpha
Helix 36
AD9
C
89 93Right-handed 310
Helix 37
AE1
C
94 114Right-handed alpha
Helix 38
AE2
C
135 148Right-handed alpha
Helix 39
AE3
C
157 162Right-handed alpha
Helix 40
AE4
C
163 167Right-handed 310
Helix 41
AE5
C
169 178Right-handed alpha
Helix 42
AE6
C
179 181Right-handed 310
Helix 43
AE7
C
192 201Right-handed alpha
Helix 44
AE8
C
215 231Right-handed alpha
Helix 45
AE9
C
247 258Right-handed alpha
Helix 46
AF1
C
270 274Right-handed 310
Helix 47
AF2
C
276 286Right-handed alpha
Helix 48
AF3
C
295 301Right-handed alpha
Helix 49
AF4
C
312 316Right-handed 310
Helix 50
AF5
C
319 327Right-handed alpha
Helix 51
AF6
C
333 338Right-handed alpha
Helix 52
AF7
C
357 363Right-handed 310
Helix 53
AF8
C
367 389Right-handed alpha
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There are 6 sheets in PDB entry 6YSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
125 130parallel
Strand 3
A
183 188parallel
Strand 4
A
205 210parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 293first strand
Strand 2
A
264 268parallel
Strand 3
A
237 241parallel
Strand 4
A
305 308parallel
Strand 5
A
345 347parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
125 130parallel
Strand 3
B
183 188parallel
Strand 4
B
205 210parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 293first strand
Strand 2
B
264 268parallel
Strand 3
B
237 241parallel
Strand 4
B
305 308parallel
Strand 5
B
345 347parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 153first strand
Strand 2
C
125 130parallel
Strand 3
C
183 188parallel
Strand 4
C
205 210parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 292first strand
Strand 2
C
264 268parallel
Strand 3
C
237 241parallel
Strand 4
C
305 308parallel
Strand 5
C
345 347parallel
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