Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YSW entry

There are 2 chains in PDB entry 6YSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 4ALA 710
A
 THR 4ILE 653
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 6YSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
34 50Right-handed alpha
Helix 2
AA2
B
70 76Right-handed alpha
Helix 3
AA3
B
79 99Right-handed alpha
Helix 4
AA4
B
114 123Right-handed alpha
Helix 5
AA5
B
138 144Right-handed 310
Helix 6
AA6
B
150 155Right-handed alpha
Helix 7
AA7
B
155 160Right-handed alpha
Helix 8
AA8
B
160 171Right-handed alpha
Helix 9
AA9
B
175 182Right-handed alpha
Helix 10
AB1
B
193 204Right-handed alpha
Helix 11
AB2
B
223 241Right-handed alpha
Helix 12
AB3
B
244 261Right-handed alpha
Helix 13
AB4
B
261 278Right-handed alpha
Helix 14
AB5
B
279 298Right-handed alpha
Helix 15
AB6
B
316 329Right-handed alpha
Helix 16
AB7
B
341 357Right-handed alpha
Helix 17
AB8
B
358 360Right-handed 310
Helix 18
AB9
B
366 375Right-handed alpha
Helix 19
AC1
B
399 414Right-handed alpha
Helix 20
AC2
B
428 433Right-handed alpha
Helix 21
AC3
B
438 440Right-handed 310
Helix 22
AC4
B
466 480Right-handed alpha
Helix 23
AC5
B
499 511Right-handed alpha
Helix 24
AC6
B
515 527Right-handed alpha
Helix 25
AC7
B
531 540Right-handed alpha
Helix 26
AC8
B
540 545Right-handed alpha
Helix 27
AC9
B
547 556Right-handed alpha
Helix 28
AD1
B
557 560Right-handed 310
Helix 29
AD2
B
564 570Right-handed alpha
Helix 30
AD3
B
571 573Right-handed 310
Helix 31
AD4
B
600 605Right-handed alpha
Helix 32
AD5
B
615 636Right-handed alpha
Helix 33
AD6
B
641 651Right-handed alpha
Helix 34
AD7
B
656 660Right-handed 310
Helix 35
AD8
B
661 670Right-handed alpha
Helix 36
AD9
B
670 686Right-handed alpha
Helix 37
AE1
B
687 690Right-handed 310
Helix 38
AE2
B
694 701Right-handed alpha
Helix 39
AE3
A
32 37Right-handed 310
Helix 40
AE4
A
38 46Right-handed alpha
Helix 41
AE5
A
70 76Right-handed alpha
Helix 42
AE6
A
79 99Right-handed alpha
Helix 43
AE7
A
114 123Right-handed alpha
Helix 44
AE8
A
139 144Right-handed 310
Helix 45
AE9
A
150 159Right-handed alpha
Helix 46
AF1
A
160 171Right-handed alpha
Helix 47
AF2
A
176 182Right-handed alpha
Helix 48
AF3
A
190 192Right-handed 310
Helix 49
AF4
A
193 202Right-handed alpha
Helix 50
AF5
A
221 241Right-handed alpha
Helix 51
AF6
A
244 261Right-handed alpha
Helix 52
AF7
A
261 278Right-handed alpha
Helix 53
AF8
A
279 298Right-handed alpha
Helix 54
AF9
A
316 329Right-handed alpha
Helix 55
AG1
A
341 362Right-handed alpha
Helix 56
AG2
A
369 375Right-handed alpha
Helix 57
AG3
A
399 414Right-handed alpha
Helix 58
AG4
A
428 433Right-handed alpha
Helix 59
AG5
A
438 440Right-handed 310
Helix 60
AG6
A
466 480Right-handed alpha
Helix 61
AG7
A
494 512Right-handed alpha
Helix 62
AG8
A
515 525Right-handed alpha
Helix 63
AG9
A
531 540Right-handed alpha
Helix 64
AH1
A
540 546Right-handed alpha
Helix 65
AH2
A
547 556Right-handed alpha
Helix 66
AH3
A
557 560Right-handed 310
Helix 67
AH4
A
564 569Right-handed alpha
Helix 68
AH5
A
599 602Right-handed 310
Helix 69
AH6
A
614 636Right-handed alpha
Helix 70
AH7
A
641 652Right-handed alpha
Helix 71
AH8
A
661 670Right-handed alpha
Helix 72
AH9
A
670 686Right-handed alpha
Helix 73
AI1
A
687 690Right-handed 310
Helix 74
AI2
A
694 702Right-handed alpha
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There are 8 sheets in PDB entry 6YSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
54 59parallel
Strand 4
B
103 108parallel
Strand 5
B
125 128parallel
Strand 6
B
187 188parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
111 113parallel
Strand 3
B
136 137parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
335 338parallel
Strand 3
B
311 314parallel
Strand 4
B
391 394parallel
Strand 5
B
419 422parallel
Strand 6
B
442 446parallel
Strand 7
B
456 461anti-parallel
Strand 8
B
483 486parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
54 58parallel
Strand 4
A
103 108parallel
Strand 5
A
125 128parallel
Strand 6
A
187 188parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
68 69parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
111 113parallel
Strand 3
A
135 137parallel
Strand 4
A
173 175anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
335 338parallel
Strand 3
A
311 314parallel
Strand 4
A
391 394parallel
Strand 5
A
419 422parallel
Strand 6
A
442 446parallel
Strand 7
A
456 461anti-parallel
Strand 8
A
483 486parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
596 597anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il