Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YSY entry

There are 3 chains in PDB entry 6YSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3TYR 129
A
 TRP 131GLU 809
B
 ASP 37SER 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 6YSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed 310
Helix 2
AA2
A
13 18Right-handed alpha
Helix 3
AA3
A
20 29Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
98 112Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
154 170Right-handed alpha
Helix 9
AA9
A
184 199Right-handed alpha
Helix 10
AB1
A
218 234Right-handed alpha
Helix 11
AB2
A
272 277Right-handed 310
Helix 12
AB3
A
286 294Right-handed alpha
Helix 13
AB4
A
297 305Right-handed alpha
Helix 14
AB5
A
309 313Right-handed 310
Helix 15
AB6
A
327 343Right-handed alpha
Helix 16
AB7
A
345 363Right-handed alpha
Helix 17
AB8
A
381 391Right-handed alpha
Helix 18
AB9
A
394 404Right-handed alpha
Helix 19
AC1
A
419 451Right-handed alpha
Helix 20
AC2
A
475 498Right-handed alpha
Helix 21
AC3
A
498 507Right-handed alpha
Helix 22
AC4
A
520 529Right-handed alpha
Helix 23
AC5
A
532 542Right-handed alpha
Helix 24
AC6
A
547 560Right-handed alpha
Helix 25
AC7
A
595 600Right-handed alpha
Helix 26
AC8
A
605 614Right-handed alpha
Helix 27
AC9
A
617 624Right-handed alpha
Helix 28
AD1
A
649 667Right-handed alpha
Helix 29
AD2
A
688 700Right-handed alpha
Helix 30
AD3
A
700 711Right-handed alpha
Helix 31
AD4
A
718 726Right-handed alpha
Helix 32
AD5
A
727 733Right-handed 310
Helix 33
AD6
A
740 750Right-handed alpha
Helix 34
AD7
A
771 809Right-handed alpha
Helix 35
AD8
B
46 60Right-handed alpha
Helix 36
AD9
B
70 80Right-handed alpha
Helix 37
AE1
B
85 93Right-handed alpha
Helix 38
AE2
B
97 104Right-handed alpha
Helix 39
AE3
B
108 121Right-handed alpha
Helix 40
AE4
B
126 136Right-handed alpha
Helix 41
AE5
B
147 157Right-handed alpha
Helix 42
AE6
B
162 170Right-handed alpha
Helix 43
AE7
B
181 190Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6YSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
46 56anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
669 676parallel
Strand 4
A
173 178parallel
Strand 5
A
458 464parallel
Strand 6
A
249 255anti-parallel
Strand 7
A
261 268anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
244 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
376 378anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
580 584anti-parallel
Strand 3
A
587 591anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 717first strand
Strand 2
A
765 768anti-parallel
Strand 3
A
759 761anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
179 180anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il