Analysis of interatomic Contacts of Structural Units in PDB entry:
6YSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YSZ entry

There are 6 chains in PDB entry 6YSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 59LEU 374
B
 LYS 59LEU 374
C
 LYS 59LEU 374
D
 LYS 59LEU 374
E
 LYS 59LEU 374
F
 LYS 59LEU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 6YSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 78Right-handed alpha
Helix 2
AA2
A
81 88Right-handed alpha
Helix 3
AA3
A
97 126Right-handed alpha
Helix 4
AA4
A
132 154Right-handed alpha
Helix 5
AA5
A
160 168Right-handed alpha
Helix 6
AA6
A
170 201Right-handed alpha
Helix 7
AA7
A
202 205Right-handed 310
Helix 8
AA8
A
216 231Right-handed alpha
Helix 9
AA9
A
238 253Right-handed alpha
Helix 10
AB1
A
256 265Right-handed alpha
Helix 11
AB2
A
278 282Right-handed alpha
Helix 12
AB3
A
283 302Right-handed alpha
Helix 13
AB4
A
302 318Right-handed alpha
Helix 14
AB5
A
321 337Right-handed alpha
Helix 15
AB6
A
338 340Right-handed 310
Helix 16
AB7
A
348 371Right-handed alpha
Helix 17
AB8
A
372 374Right-handed 310
Helix 18
AB9
B
60 78Right-handed alpha
Helix 19
AC1
B
81 88Right-handed alpha
Helix 20
AC2
B
97 126Right-handed alpha
Helix 21
AC3
B
132 154Right-handed alpha
Helix 22
AC4
B
160 168Right-handed alpha
Helix 23
AC5
B
170 201Right-handed alpha
Helix 24
AC6
B
202 205Right-handed 310
Helix 25
AC7
B
216 231Right-handed alpha
Helix 26
AC8
B
238 253Right-handed alpha
Helix 27
AC9
B
256 265Right-handed alpha
Helix 28
AD1
B
278 282Right-handed alpha
Helix 29
AD2
B
283 302Right-handed alpha
Helix 30
AD3
B
302 318Right-handed alpha
Helix 31
AD4
B
321 337Right-handed alpha
Helix 32
AD5
B
338 340Right-handed 310
Helix 33
AD6
B
348 371Right-handed alpha
Helix 34
AD7
B
372 374Right-handed 310
Helix 35
AD8
C
60 78Right-handed alpha
Helix 36
AD9
C
81 88Right-handed alpha
Helix 37
AE1
C
97 126Right-handed alpha
Helix 38
AE2
C
132 154Right-handed alpha
Helix 39
AE3
C
160 168Right-handed alpha
Helix 40
AE4
C
170 201Right-handed alpha
Helix 41
AE5
C
202 205Right-handed 310
Helix 42
AE6
C
216 231Right-handed alpha
Helix 43
AE7
C
238 253Right-handed alpha
Helix 44
AE8
C
256 265Right-handed alpha
Helix 45
AE9
C
278 282Right-handed alpha
Helix 46
AF1
C
283 302Right-handed alpha
Helix 47
AF2
C
302 318Right-handed alpha
Helix 48
AF3
C
321 337Right-handed alpha
Helix 49
AF4
C
338 340Right-handed 310
Helix 50
AF5
C
348 371Right-handed alpha
Helix 51
AF6
C
372 374Right-handed 310
Helix 52
AF7
D
60 78Right-handed alpha
Helix 53
AF8
D
81 88Right-handed alpha
Helix 54
AF9
D
97 126Right-handed alpha
Helix 55
AG1
D
132 154Right-handed alpha
Helix 56
AG2
D
160 168Right-handed alpha
Helix 57
AG3
D
170 201Right-handed alpha
Helix 58
AG4
D
202 205Right-handed 310
Helix 59
AG5
D
216 231Right-handed alpha
Helix 60
AG6
D
238 253Right-handed alpha
Helix 61
AG7
D
256 265Right-handed alpha
Helix 62
AG8
D
278 282Right-handed alpha
Helix 63
AG9
D
283 302Right-handed alpha
Helix 64
AH1
D
302 318Right-handed alpha
Helix 65
AH2
D
321 337Right-handed alpha
Helix 66
AH3
D
338 340Right-handed 310
Helix 67
AH4
D
348 371Right-handed alpha
Helix 68
AH5
D
372 374Right-handed 310
Helix 69
AH6
E
60 78Right-handed alpha
Helix 70
AH7
E
81 88Right-handed alpha
Helix 71
AH8
E
97 126Right-handed alpha
Helix 72
AH9
E
132 154Right-handed alpha
Helix 73
AI1
E
160 168Right-handed alpha
Helix 74
AI2
E
170 201Right-handed alpha
Helix 75
AI3
E
202 205Right-handed 310
Helix 76
AI4
E
216 231Right-handed alpha
Helix 77
AI5
E
238 253Right-handed alpha
Helix 78
AI6
E
256 265Right-handed alpha
Helix 79
AI7
E
278 282Right-handed alpha
Helix 80
AI8
E
283 302Right-handed alpha
Helix 81
AI9
E
302 318Right-handed alpha
Helix 82
AJ1
E
321 337Right-handed alpha
Helix 83
AJ2
E
338 340Right-handed 310
Helix 84
AJ3
E
348 371Right-handed alpha
Helix 85
AJ4
E
372 374Right-handed 310
Helix 86
AJ5
F
60 78Right-handed alpha
Helix 87
AJ6
F
81 88Right-handed alpha
Helix 88
AJ7
F
97 126Right-handed alpha
Helix 89
AJ8
F
132 154Right-handed alpha
Helix 90
AJ9
F
160 168Right-handed alpha
Helix 91
AK1
F
170 201Right-handed alpha
Helix 92
AK2
F
202 205Right-handed 310
Helix 93
AK3
F
216 231Right-handed alpha
Helix 94
AK4
F
238 253Right-handed alpha
Helix 95
AK5
F
256 265Right-handed alpha
Helix 96
AK6
F
278 282Right-handed alpha
Helix 97
AK7
F
283 302Right-handed alpha
Helix 98
AK8
F
302 318Right-handed alpha
Helix 99
AK9
F
321 337Right-handed alpha
Helix 100
AL1
F
338 340Right-handed 310
Helix 101
AL2
F
348 371Right-handed alpha
Helix 102
AL3
F
372 374Right-handed 310
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There are 6 sheets in PDB entry 6YSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
275 277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
275 277anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 270first strand
Strand 2
C
275 277anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 270first strand
Strand 2
D
275 277anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
268 270first strand
Strand 2
E
275 277anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
268 270first strand
Strand 2
F
275 277anti-parallel
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