Analysis of interatomic Contacts of Structural Units in PDB entry:
6YT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YT3 entry

There are 2 chains in PDB entry 6YT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34ALA 276
B
 ASP 2SER 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6YT3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
54 69Right-handed alpha
Helix 3
AA3
A
81 94Right-handed alpha
Helix 4
AA4
A
97 120Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
129 144Right-handed alpha
Helix 7
AA7
A
155 159Right-handed 310
Helix 8
AA8
A
169 181Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
216 222Right-handed alpha
Helix 11
AB2
A
229 238Right-handed alpha
Helix 12
AB3
A
254 260Right-handed alpha
Helix 13
AB4
B
11 16Right-handed alpha
Helix 14
AB5
B
32 49Right-handed alpha
Helix 15
AB6
B
65 70Right-handed alpha
Helix 16
AB7
B
95 107Right-handed alpha
Helix 17
AB8
B
107 122Right-handed alpha
Helix 18
AB9
B
126 135Right-handed alpha
Helix 19
AC1
B
159 174Right-handed alpha
Helix 20
AC2
B
186 199Right-handed alpha
Helix 21
AC3
B
202 225Right-handed alpha
Helix 22
AC4
B
226 229Right-handed 310
Helix 23
AC5
B
240 248Right-handed alpha
Helix 24
AC6
B
259 263Right-handed 310
Helix 25
AC7
B
275 288Right-handed alpha
Helix 26
AC8
B
320 327Right-handed alpha
Helix 27
AC9
B
334 344Right-handed alpha
Helix 28
AD1
B
359 366Right-handed alpha
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There are 4 sheets in PDB entry 6YT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
73 78parallel
Strand 3
A
41 46parallel
Strand 4
A
185 190parallel
Strand 5
A
244 249parallel
Strand 6
A
267 270anti-parallel
Strand 7
A
213 215parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
54 59parallel
Strand 3
B
23 28parallel
Strand 4
B
77 82anti-parallel
Strand 5
B
85 91anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
250 254parallel
Strand 3
B
178 183parallel
Strand 4
B
145 150parallel
Strand 5
B
292 296parallel
Strand 6
B
349 354parallel
Strand 7
B
372 375anti-parallel
Strand 8
B
317 319parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
314 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il