Analysis of interatomic Contacts of Structural Units in PDB entry:
6YTT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YTT entry

There are 2 chains in PDB entry 6YTT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	MET 708
B	GLU 3	ILE 618

There are127 helices in PDB entry 6YTT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	29	Right-handed alpha
Helix 2	AA2	A	44	52	Right-handed alpha
Helix 3	AA3	A	57	64	Right-handed alpha
Helix 4	AA4	A	64	71	Right-handed alpha
Helix 5	AA5	A	77	103	Right-handed alpha
Helix 6	AA6	A	116	129	Right-handed alpha
Helix 7	AA7	A	144	158	Right-handed alpha
Helix 8	AA8	A	167	175	Right-handed alpha
Helix 9	AA9	A	191	194	Right-handed 310
Helix 10	AB1	A	195	209	Right-handed alpha
Helix 11	AB2	A	216	227	Right-handed alpha
Helix 12	AB3	A	239	253	Right-handed alpha
Helix 13	AB4	A	274	276	Right-handed 310
Helix 14	AB5	A	277	286	Right-handed alpha
Helix 15	AB6	A	302	306	Right-handed 310
Helix 16	AB7	A	311	313	Right-handed 310
Helix 17	AB8	A	374	376	Right-handed 310
Helix 18	AB9	A	377	391	Right-handed alpha
Helix 19	AC1	A	410	415	Right-handed alpha
Helix 20	AC2	A	419	434	Right-handed alpha
Helix 21	AC3	A	448	454	Right-handed alpha
Helix 22	AC4	A	459	473	Right-handed alpha
Helix 23	AC5	A	486	491	Right-handed 310
Helix 24	AC6	A	511	522	Right-handed alpha
Helix 25	AC7	A	544	554	Right-handed alpha
Helix 26	AC8	A	606	612	Right-handed alpha
Helix 27	AC9	A	641	644	Right-handed 310
Helix 28	AD1	A	650	668	Right-handed alpha
Helix 29	AD2	A	673	678	Right-handed alpha
Helix 30	AD3	A	686	698	Right-handed alpha
Helix 31	AD4	B	9	23	Right-handed alpha
Helix 32	AD5	B	26	35	Right-handed alpha
Helix 33	AD6	B	38	44	Right-handed alpha
Helix 34	AD7	B	73	106	Right-handed alpha
Helix 35	AD8	B	117	128	Right-handed alpha
Helix 36	AD9	B	136	154	Right-handed alpha
Helix 37	AE1	B	166	177	Right-handed alpha
Helix 38	AE2	B	182	194	Right-handed alpha
Helix 39	AE3	B	201	218	Right-handed alpha
Helix 40	AE4	B	219	233	Right-handed alpha
Helix 41	AE5	B	243	247	Right-handed 310
Helix 42	AE6	B	260	271	Right-handed alpha
Helix 43	AE7	B	273	283	Right-handed alpha
Helix 44	AE8	B	294	305	Right-handed alpha
Helix 45	AE9	B	311	313	Right-handed 310
Helix 46	AF1	B	314	321	Right-handed alpha
Helix 47	AF2	B	336	342	Right-handed alpha
Helix 48	AF3	B	343	345	Right-handed 310
Helix 49	AF4	B	370	385	Right-handed alpha
Helix 50	AF5	B	386	389	Right-handed 310
Helix 51	AF6	B	390	394	Right-handed 310
Helix 52	AF7	B	408	417	Right-handed alpha
Helix 53	AF8	B	418	420	Right-handed 310
Helix 54	AF9	B	430	440	Right-handed alpha
Helix 55	AG1	B	459	472	Right-handed alpha
Helix 56	AG2	B	479	490	Right-handed alpha
Helix 57	AG3	B	495	501	Right-handed alpha
Helix 58	AG4	B	502	513	Right-handed alpha
Helix 59	AG5	B	525	540	Right-handed alpha
Helix 60	AG6	B	543	547	Right-handed 310
Helix 61	AG7	B	558	571	Right-handed alpha
Helix 62	AG8	B	586	595	Right-handed alpha
Helix 63	AG9	B	595	602	Right-handed alpha
Helix 64	AH1	B	610	630	Right-handed alpha
Helix 65	AH2	C	9	23	Right-handed alpha
Helix 66	AH3	C	26	35	Right-handed alpha
Helix 67	AH4	C	38	44	Right-handed alpha
Helix 68	AH5	C	73	106	Right-handed alpha
Helix 69	AH6	C	117	128	Right-handed alpha
Helix 70	AH7	C	136	154	Right-handed alpha
Helix 71	AH8	C	166	177	Right-handed alpha
Helix 72	AH9	C	182	194	Right-handed alpha
Helix 73	AI1	C	201	218	Right-handed alpha
Helix 74	AI2	C	219	233	Right-handed alpha
Helix 75	AI3	C	243	247	Right-handed 310
Helix 76	AI4	C	260	271	Right-handed alpha
Helix 77	AI5	C	273	283	Right-handed alpha
Helix 78	AI6	C	294	305	Right-handed alpha
Helix 79	AI7	C	311	313	Right-handed 310
Helix 80	AI8	C	314	321	Right-handed alpha
Helix 81	AI9	C	336	342	Right-handed alpha
Helix 82	AJ1	C	343	345	Right-handed 310
Helix 83	AJ2	C	370	385	Right-handed alpha
Helix 84	AJ3	C	386	389	Right-handed 310
Helix 85	AJ4	C	408	417	Right-handed alpha
Helix 86	AJ5	C	418	420	Right-handed 310
Helix 87	AJ6	C	430	440	Right-handed alpha
Helix 88	AJ7	C	459	472	Right-handed alpha
Helix 89	AJ8	C	479	490	Right-handed alpha
Helix 90	AJ9	C	495	501	Right-handed alpha
Helix 91	AK1	C	502	513	Right-handed alpha
Helix 92	AK2	C	525	540	Right-handed alpha
Helix 93	AK3	C	543	547	Right-handed 310
Helix 94	AK4	C	558	572	Right-handed alpha
Helix 95	AK5	C	586	595	Right-handed alpha
Helix 96	AK6	C	595	602	Right-handed alpha
Helix 97	AK7	C	610	630	Right-handed alpha
Helix 98	AK8	D	2	29	Right-handed alpha
Helix 99	AK9	D	44	52	Right-handed alpha
Helix 100	AL1	D	57	64	Right-handed alpha
Helix 101	AL2	D	64	71	Right-handed alpha
Helix 102	AL3	D	77	103	Right-handed alpha
Helix 103	AL4	D	116	129	Right-handed alpha
Helix 104	AL5	D	144	159	Right-handed alpha
Helix 105	AL6	D	167	175	Right-handed alpha
Helix 106	AL7	D	191	194	Right-handed 310
Helix 107	AL8	D	195	209	Right-handed alpha
Helix 108	AL9	D	216	227	Right-handed alpha
Helix 109	AM1	D	239	253	Right-handed alpha
Helix 110	AM2	D	274	276	Right-handed 310
Helix 111	AM3	D	277	286	Right-handed alpha
Helix 112	AM4	D	311	313	Right-handed 310
Helix 113	AM5	D	377	391	Right-handed alpha
Helix 114	AM6	D	410	415	Right-handed alpha
Helix 115	AM7	D	419	434	Right-handed alpha
Helix 116	AM8	D	448	470	Right-handed alpha
Helix 117	AM9	D	486	491	Right-handed 310
Helix 118	AN1	D	511	522	Right-handed alpha
Helix 119	AN2	D	544	554	Right-handed alpha
Helix 120	AN3	D	606	612	Right-handed alpha
Helix 121	AN4	D	628	633	Right-handed 310
Helix 122	AN5	D	641	644	Right-handed 310
Helix 123	AN6	D	650	657	Right-handed alpha
Helix 124	AN7	D	657	667	Right-handed alpha
Helix 125	AN8	D	673	678	Right-handed alpha
Helix 126	AN9	D	686	698	Right-handed alpha
Helix 127	AO1	D	699	704	Right-handed 310

There are 20 sheets in PDB entry 6YTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	161	165	parallel
Strand 3	A	135	140	parallel
Strand 4	A	230	235	parallel
Strand 5	A	256	258	parallel
Strand 6	A	269	271	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	315	320	parallel
Strand 3	A	405	409	anti-parallel
Strand 4	A	395	398	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	333	first strand
Strand 2	A	362	369	parallel
Strand 3	A	440	446	anti-parallel
Strand 4	A	342	346	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	481	485	anti-parallel
Strand 3	A	528	531	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	537	first strand
Strand 2	A	542	543	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	626	first strand
Strand 2	A	579	584	anti-parallel
Strand 3	A	589	594	anti-parallel
Strand 4	A	646	648	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	401	405	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	288	293	parallel
Strand 3	B	252	257	parallel
Strand 4	B	326	329	parallel
Strand 5	B	348	351	parallel
Strand 6	B	362	363	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	519	first strand
Strand 2	B	474	478	parallel
Strand 3	B	444	448	parallel
Strand 4	B	549	553	parallel
Strand 5	B	574	577	parallel
Strand 6	B	605	607	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	56	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	401	405	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	310	first strand
Strand 2	C	288	293	parallel
Strand 3	C	252	257	parallel
Strand 4	C	326	329	parallel
Strand 5	C	348	351	parallel
Strand 6	C	362	363	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	474	478	parallel
Strand 3	C	444	448	parallel
Strand 4	C	549	553	parallel
Strand 5	C	574	577	parallel
Strand 6	C	605	607	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	161	166	parallel
Strand 3	D	135	140	parallel
Strand 4	D	230	235	parallel
Strand 5	D	256	258	parallel
Strand 6	D	269	271	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	359	first strand
Strand 2	D	315	320	parallel
Strand 3	D	405	409	anti-parallel
Strand 4	D	395	398	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	332	first strand
Strand 2	D	362	369	parallel
Strand 3	D	440	446	anti-parallel
Strand 4	D	342	346	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	499	first strand
Strand 2	D	481	485	anti-parallel
Strand 3	D	528	531	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	537	first strand
Strand 2	D	542	543	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	626	first strand
Strand 2	D	579	584	anti-parallel
Strand 3	D	589	594	anti-parallel
Strand 4	D	646	648	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YTT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YTT