Analysis of interatomic Contacts of Structural Units in PDB entry:
6YTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YTY entry

There is 1 chain in PDB entry 6YTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 127SER 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6YTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 135Right-handed alpha
Helix 2
AA2
A
191 212Right-handed alpha
Helix 3
AA3
A
242 250Right-handed alpha
Helix 4
AA4
A
256 276Right-handed alpha
Helix 5
AA5
A
285 287Right-handed 310
Helix 6
AA6
A
337 341Right-handed 310
Helix 7
AA7
A
342 347Right-handed alpha
Helix 8
AA8
A
353 370Right-handed alpha
Helix 9
AA9
A
378 391Right-handed alpha
Helix 10
AB1
A
394 401Right-handed alpha
Helix 11
AB2
A
403 405Right-handed 310
Helix 12
AB3
A
418 428Right-handed alpha
Helix 13
AB4
A
430 435Right-handed 310
Helix 14
AB5
A
439 453Right-handed alpha
Helix 15
AB6
A
462 467Right-handed alpha
Helix 16
AB7
A
468 475Right-handed 310
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There are 5 sheets in PDB entry 6YTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
156 165anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
231 237anti-parallel
Strand 6
A
222 228anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
325 326anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 300first strand
Strand 2
A
308 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
411 412anti-parallel
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