Analysis of interatomic Contacts of Structural Units in PDB entry:
6YU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YU8 entry

There are 2 chains in PDB entry 6YU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1755THR 2042
B
 ASP 1SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6YU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1776 1794Right-handed alpha
Helix 2
AA2
A
1811 1818Right-handed alpha
Helix 3
AA3
A
1835 1844Right-handed alpha
Helix 4
AA4
A
1872 1877Right-handed 310
Helix 5
AA5
A
1878 1884Right-handed alpha
Helix 6
AA6
A
1905 1911Right-handed alpha
Helix 7
AA7
A
1912 1914Right-handed 310
Helix 8
AA8
A
1933 1947Right-handed alpha
Helix 9
AA9
A
1964 1975Right-handed alpha
Helix 10
AB1
A
2015 2037Right-handed alpha
Helix 11
AB2
B
28 31Right-handed 310
Helix 12
AB3
B
61 65Right-handed 310
Helix 13
AB4
B
74 76Right-handed 310
Helix 14
AB5
B
87 91Right-handed 310
Helix 15
AB6
B
105 109Right-handed 310
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There are 5 sheets in PDB entry 6YU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1758 1761first strand
Strand 2
A
1979 1986anti-parallel
Strand 3
A
1996 2004anti-parallel
Strand 4
A
1955 1961anti-parallel
Strand 5
A
1920 1923parallel
Strand 6
A
1826 1830parallel
Strand 7
A
1849 1853parallel
Strand 8
A
1888 1892parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1865 1866first strand
Strand 2
A
1869 1870anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
116 121parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 52anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
116 121parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
111 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il