Analysis of interatomic Contacts of Structural Units in PDB entry:
6YU9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YU9 entry

There are 3 chains in PDB entry 6YU9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ILE 631
B	LYS 4	ILE 631
C	LYS 4	ILE 77

There are133 helices in PDB entry 6YU9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	26	34	Right-handed alpha
Helix 3	AA3	A	38	43	Right-handed alpha
Helix 4	AA4	A	73	106	Right-handed alpha
Helix 5	AA5	A	117	128	Right-handed alpha
Helix 6	AA6	A	136	154	Right-handed alpha
Helix 7	AA7	A	166	177	Right-handed alpha
Helix 8	AA8	A	182	194	Right-handed alpha
Helix 9	AA9	A	201	218	Right-handed alpha
Helix 10	AB1	A	219	233	Right-handed alpha
Helix 11	AB2	A	243	247	Right-handed 310
Helix 12	AB3	A	260	271	Right-handed alpha
Helix 13	AB4	A	273	283	Right-handed alpha
Helix 14	AB5	A	294	305	Right-handed alpha
Helix 15	AB6	A	311	313	Right-handed 310
Helix 16	AB7	A	314	321	Right-handed alpha
Helix 17	AB8	A	336	342	Right-handed alpha
Helix 18	AB9	A	343	345	Right-handed 310
Helix 19	AC1	A	370	385	Right-handed alpha
Helix 20	AC2	A	386	389	Right-handed 310
Helix 21	AC3	A	390	394	Right-handed 310
Helix 22	AC4	A	408	417	Right-handed alpha
Helix 23	AC5	A	418	420	Right-handed 310
Helix 24	AC6	A	430	440	Right-handed alpha
Helix 25	AC7	A	459	472	Right-handed alpha
Helix 26	AC8	A	480	490	Right-handed alpha
Helix 27	AC9	A	495	501	Right-handed alpha
Helix 28	AD1	A	502	513	Right-handed alpha
Helix 29	AD2	A	525	540	Right-handed alpha
Helix 30	AD3	A	543	547	Right-handed 310
Helix 31	AD4	A	558	571	Right-handed alpha
Helix 32	AD5	A	586	595	Right-handed alpha
Helix 33	AD6	A	595	602	Right-handed alpha
Helix 34	AD7	A	610	630	Right-handed alpha
Helix 35	AD8	B	9	23	Right-handed alpha
Helix 36	AD9	B	26	34	Right-handed alpha
Helix 37	AE1	B	38	44	Right-handed alpha
Helix 38	AE2	B	73	106	Right-handed alpha
Helix 39	AE3	B	117	128	Right-handed alpha
Helix 40	AE4	B	136	154	Right-handed alpha
Helix 41	AE5	B	166	177	Right-handed alpha
Helix 42	AE6	B	182	194	Right-handed alpha
Helix 43	AE7	B	201	218	Right-handed alpha
Helix 44	AE8	B	219	233	Right-handed alpha
Helix 45	AE9	B	243	247	Right-handed 310
Helix 46	AF1	B	260	271	Right-handed alpha
Helix 47	AF2	B	273	283	Right-handed alpha
Helix 48	AF3	B	294	305	Right-handed alpha
Helix 49	AF4	B	311	313	Right-handed 310
Helix 50	AF5	B	314	321	Right-handed alpha
Helix 51	AF6	B	336	343	Right-handed alpha
Helix 52	AF7	B	370	385	Right-handed alpha
Helix 53	AF8	B	386	389	Right-handed 310
Helix 54	AF9	B	390	394	Right-handed 310
Helix 55	AG1	B	408	417	Right-handed alpha
Helix 56	AG2	B	418	420	Right-handed 310
Helix 57	AG3	B	430	440	Right-handed alpha
Helix 58	AG4	B	459	472	Right-handed alpha
Helix 59	AG5	B	479	490	Right-handed alpha
Helix 60	AG6	B	495	501	Right-handed alpha
Helix 61	AG7	B	502	513	Right-handed alpha
Helix 62	AG8	B	525	540	Right-handed alpha
Helix 63	AG9	B	543	547	Right-handed 310
Helix 64	AH1	B	558	571	Right-handed alpha
Helix 65	AH2	B	586	595	Right-handed alpha
Helix 66	AH3	B	595	602	Right-handed alpha
Helix 67	AH4	B	610	630	Right-handed alpha
Helix 68	AH5	C	9	23	Right-handed alpha
Helix 69	AH6	C	26	34	Right-handed alpha
Helix 70	AH7	C	38	43	Right-handed alpha
Helix 71	AH8	C	73	106	Right-handed alpha
Helix 72	AH9	C	117	128	Right-handed alpha
Helix 73	AI1	C	136	154	Right-handed alpha
Helix 74	AI2	C	166	177	Right-handed alpha
Helix 75	AI3	C	182	194	Right-handed alpha
Helix 76	AI4	C	201	218	Right-handed alpha
Helix 77	AI5	C	219	233	Right-handed alpha
Helix 78	AI6	C	243	247	Right-handed 310
Helix 79	AI7	C	260	271	Right-handed alpha
Helix 80	AI8	C	273	283	Right-handed alpha
Helix 81	AI9	C	294	305	Right-handed alpha
Helix 82	AJ1	C	311	313	Right-handed 310
Helix 83	AJ2	C	314	321	Right-handed alpha
Helix 84	AJ3	C	337	342	Right-handed alpha
Helix 85	AJ4	C	343	345	Right-handed 310
Helix 86	AJ5	C	370	385	Right-handed alpha
Helix 87	AJ6	C	386	389	Right-handed 310
Helix 88	AJ7	C	390	394	Right-handed 310
Helix 89	AJ8	C	408	418	Right-handed alpha
Helix 90	AJ9	C	430	440	Right-handed alpha
Helix 91	AK1	C	459	472	Right-handed alpha
Helix 92	AK2	C	480	490	Right-handed alpha
Helix 93	AK3	C	493	501	Right-handed alpha
Helix 94	AK4	C	502	513	Right-handed alpha
Helix 95	AK5	C	525	540	Right-handed alpha
Helix 96	AK6	C	543	547	Right-handed 310
Helix 97	AK7	C	558	571	Right-handed alpha
Helix 98	AK8	C	586	595	Right-handed alpha
Helix 99	AK9	C	596	602	Right-handed alpha
Helix 100	AL1	C	610	630	Right-handed alpha
Helix 101	AL2	D	9	23	Right-handed alpha
Helix 102	AL3	D	26	34	Right-handed alpha
Helix 103	AL4	D	38	44	Right-handed alpha
Helix 104	AL5	D	73	106	Right-handed alpha
Helix 105	AL6	D	117	128	Right-handed alpha
Helix 106	AL7	D	136	154	Right-handed alpha
Helix 107	AL8	D	166	177	Right-handed alpha
Helix 108	AL9	D	182	194	Right-handed alpha
Helix 109	AM1	D	201	218	Right-handed alpha
Helix 110	AM2	D	219	233	Right-handed alpha
Helix 111	AM3	D	243	247	Right-handed 310
Helix 112	AM4	D	260	271	Right-handed alpha
Helix 113	AM5	D	273	283	Right-handed alpha
Helix 114	AM6	D	294	305	Right-handed alpha
Helix 115	AM7	D	311	313	Right-handed 310
Helix 116	AM8	D	314	321	Right-handed alpha
Helix 117	AM9	D	336	343	Right-handed alpha
Helix 118	AN1	D	370	385	Right-handed alpha
Helix 119	AN2	D	386	389	Right-handed 310
Helix 120	AN3	D	390	394	Right-handed 310
Helix 121	AN4	D	408	417	Right-handed alpha
Helix 122	AN5	D	418	420	Right-handed 310
Helix 123	AN6	D	430	440	Right-handed alpha
Helix 124	AN7	D	459	472	Right-handed alpha
Helix 125	AN8	D	479	490	Right-handed alpha
Helix 126	AN9	D	495	501	Right-handed alpha
Helix 127	AO1	D	502	513	Right-handed alpha
Helix 128	AO2	D	525	541	Right-handed alpha
Helix 129	AO3	D	543	547	Right-handed 310
Helix 130	AO4	D	558	571	Right-handed alpha
Helix 131	AO5	D	586	595	Right-handed alpha
Helix 132	AO6	D	596	602	Right-handed alpha
Helix 133	AO7	D	610	630	Right-handed alpha

There are 16 sheets in PDB entry 6YU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	55	56	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	401	405	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	288	293	parallel
Strand 3	A	252	257	parallel
Strand 4	A	324	329	parallel
Strand 5	A	348	351	parallel
Strand 6	A	362	363	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	474	479	parallel
Strand 3	A	444	448	parallel
Strand 4	A	549	553	parallel
Strand 5	A	574	577	parallel
Strand 6	A	605	607	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	401	405	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	288	293	parallel
Strand 3	B	252	257	parallel
Strand 4	B	326	329	parallel
Strand 5	B	348	351	parallel
Strand 6	B	362	363	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	519	first strand
Strand 2	B	474	478	parallel
Strand 3	B	444	448	parallel
Strand 4	B	549	553	parallel
Strand 5	B	574	577	parallel
Strand 6	B	605	607	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	56	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	401	405	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	310	first strand
Strand 2	C	288	293	parallel
Strand 3	C	252	257	parallel
Strand 4	C	326	329	parallel
Strand 5	C	348	351	parallel
Strand 6	C	362	363	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	521	first strand
Strand 2	C	474	479	parallel
Strand 3	C	444	448	parallel
Strand 4	C	549	553	parallel
Strand 5	C	574	577	parallel
Strand 6	C	605	607	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	55	56	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	401	405	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	310	first strand
Strand 2	D	288	293	parallel
Strand 3	D	252	257	parallel
Strand 4	D	326	329	parallel
Strand 5	D	348	351	parallel
Strand 6	D	362	363	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	519	first strand
Strand 2	D	474	478	parallel
Strand 3	D	444	448	parallel
Strand 4	D	549	553	parallel
Strand 5	D	574	577	parallel
Strand 6	D	605	607	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YU9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YU9