Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YUB entry

There are 2 chains in PDB entry 6YUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ILE 444
B
 GLY 2PRO 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6YUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
25 35Right-handed alpha
Helix 3
AA3
A
46 58Right-handed alpha
Helix 4
AA4
A
71 75Right-handed 310
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
89 102Right-handed alpha
Helix 7
AA7
A
118 124Right-handed alpha
Helix 8
AA8
A
135 150Right-handed alpha
Helix 9
AA9
A
185 190Right-handed alpha
Helix 10
AB1
A
208 229Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
290 296Right-handed alpha
Helix 13
AB4
A
322 331Right-handed alpha
Helix 14
AB5
A
344 349Right-handed alpha
Helix 15
AB6
A
360 370Right-handed alpha
Helix 16
AB7
A
402 413Right-handed alpha
Helix 17
AB8
A
416 420Right-handed 310
Helix 18
AB9
A
428 437Right-handed alpha
Helix 19
AC1
B
9 21Right-handed alpha
Helix 20
AC2
B
25 35Right-handed alpha
Helix 21
AC3
B
46 58Right-handed alpha
Helix 22
AC4
B
71 75Right-handed 310
Helix 23
AC5
B
82 86Right-handed 310
Helix 24
AC6
B
89 102Right-handed alpha
Helix 25
AC7
B
118 124Right-handed alpha
Helix 26
AC8
B
135 150Right-handed alpha
Helix 27
AC9
B
185 190Right-handed alpha
Helix 28
AD1
B
208 230Right-handed alpha
Helix 29
AD2
B
242 246Right-handed 310
Helix 30
AD3
B
290 296Right-handed alpha
Helix 31
AD4
C
321 331Right-handed alpha
Helix 32
AD5
C
344 351Right-handed alpha
Helix 33
AD6
C
360 372Right-handed alpha
Helix 34
AD7
C
402 413Right-handed alpha
Helix 35
AD8
C
416 420Right-handed 310
Helix 36
AD9
C
428 437Right-handed alpha
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There are 4 sheets in PDB entry 6YUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
61 65parallel
Strand 3
A
37 41parallel
Strand 4
A
128 131parallel
Strand 5
A
153 158parallel
Strand 6
A
162 168anti-parallel
Strand 7
A
251 256anti-parallel
Strand 8
A
268 272anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
423 427parallel
Strand 3
A
393 396parallel
Strand 4
A
338 341parallel
Strand 5
A
357 358parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
61 65parallel
Strand 3
B
37 41parallel
Strand 4
B
128 131parallel
Strand 5
B
153 159parallel
Strand 6
B
162 168anti-parallel
Strand 7
B
251 256anti-parallel
Strand 8
B
268 272anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 320first strand
Strand 2
C
423 426parallel
Strand 3
C
393 396parallel
Strand 4
C
338 341parallel
Strand 5
C
357 358parallel
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