Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YUC entry

There are 2 chains in PDB entry 6YUC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 4	PHE 304
G	ILE 11	GLY 111

There are 11 helices in PDB entry 6YUC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	9	21	Right-handed alpha
Helix 2	AA2	D	26	36	Right-handed alpha
Helix 3	AA3	D	46	58	Right-handed alpha
Helix 4	AA4	D	89	102	Right-handed alpha
Helix 5	AA5	D	115	124	Right-handed alpha
Helix 6	AA6	D	135	150	Right-handed alpha
Helix 7	AA7	D	201	206	Right-handed alpha
Helix 8	AA8	D	208	229	Right-handed alpha
Helix 9	AA9	D	290	297	Right-handed alpha
Helix 10	AB1	G	21	26	Right-handed 310
Helix 11	AB2	G	46	58	Right-handed alpha

There are 3 sheets in PDB entry 6YUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	110	first strand
Strand 2	D	61	65	parallel
Strand 3	D	37	41	parallel
Strand 4	D	128	131	parallel
Strand 5	D	153	159	parallel
Strand 6	D	162	168	anti-parallel
Strand 7	D	251	256	anti-parallel
Strand 8	D	268	272	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	34	first strand
Strand 2	G	12	18	anti-parallel
Strand 3	G	101	106	parallel
Strand 4	G	77	81	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	69	first strand
Strand 2	G	72	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YUC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUC