Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YUF entry

There are 6 chains in PDB entry 6YUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 5	ALA 619
D	PRO 209	SER 1529
A	GLY 2	TYR 1226
C	TYR 2	GLU 1193
X	C 1	C 32
Y	G 5	G 36

There are105 helices in PDB entry 6YUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	23	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	B	37	45	Right-handed alpha
Helix 4	AA4	B	54	88	Right-handed alpha
Helix 5	AA5	B	554	563	Right-handed alpha
Helix 6	AA6	B	569	575	Right-handed alpha
Helix 7	AA7	B	584	600	Right-handed alpha
Helix 8	AA8	D	215	240	Right-handed alpha
Helix 9	AA9	D	260	278	Right-handed alpha
Helix 10	AB1	D	279	283	Right-handed 310
Helix 11	AB2	D	289	301	Right-handed alpha
Helix 12	AB3	D	321	338	Right-handed alpha
Helix 13	AB4	D	350	365	Right-handed alpha
Helix 14	AB5	D	366	376	Right-handed alpha
Helix 15	AB6	D	381	385	Right-handed 310
Helix 16	AB7	D	386	411	Right-handed alpha
Helix 17	AB8	D	415	439	Right-handed alpha
Helix 18	AB9	D	444	465	Right-handed alpha
Helix 19	AC1	D	468	477	Right-handed alpha
Helix 20	AC2	D	478	482	Right-handed 310
Helix 21	AC3	D	486	491	Right-handed alpha
Helix 22	AC4	D	502	504	Right-handed 310
Helix 23	AC5	D	505	515	Right-handed alpha
Helix 24	AC6	D	541	546	Right-handed alpha
Helix 25	AC7	D	547	576	Right-handed alpha
Helix 26	AC8	D	585	600	Right-handed alpha
Helix 27	AC9	D	608	626	Right-handed alpha
Helix 28	AD1	D	630	649	Right-handed alpha
Helix 29	AD2	D	678	685	Right-handed alpha
Helix 30	AD3	D	690	695	Right-handed alpha
Helix 31	AD4	D	704	712	Right-handed alpha
Helix 32	AD5	D	713	723	Right-handed alpha
Helix 33	AD6	D	731	741	Right-handed alpha
Helix 34	AD7	D	742	745	Right-handed 310
Helix 35	AD8	D	760	767	Right-handed alpha
Helix 36	AD9	D	768	770	Right-handed 310
Helix 37	AE1	D	771	776	Right-handed alpha
Helix 38	AE2	D	776	786	Right-handed alpha
Helix 39	AE3	D	793	804	Right-handed alpha
Helix 40	AE4	D	809	813	Right-handed 310
Helix 41	AE5	D	816	826	Right-handed alpha
Helix 42	AE6	D	827	829	Right-handed 310
Helix 43	AE7	D	831	849	Right-handed alpha
Helix 44	AE8	D	852	862	Right-handed alpha
Helix 45	AE9	D	868	886	Right-handed alpha
Helix 46	AF1	D	888	901	Right-handed alpha
Helix 47	AF2	D	909	923	Right-handed alpha
Helix 48	AF3	D	946	951	Right-handed alpha
Helix 49	AF4	D	951	956	Right-handed alpha
Helix 50	AF5	D	964	978	Right-handed alpha
Helix 51	AF6	D	985	1005	Right-handed alpha
Helix 52	AF7	D	1017	1033	Right-handed alpha
Helix 53	AF8	D	1039	1045	Right-handed alpha
Helix 54	AF9	D	1045	1050	Right-handed alpha
Helix 55	AG1	D	1056	1061	Right-handed 310
Helix 56	AG2	D	1062	1073	Right-handed alpha
Helix 57	AG3	D	1083	1093	Right-handed alpha
Helix 58	AG4	D	1099	1118	Right-handed alpha
Helix 59	AG5	D	1121	1139	Right-handed alpha
Helix 60	AG6	D	1147	1152	Right-handed alpha
Helix 61	AG7	D	1152	1161	Right-handed alpha
Helix 62	AG8	D	1167	1172	Right-handed alpha
Helix 63	AG9	D	1183	1194	Right-handed alpha
Helix 64	AH1	D	1201	1218	Right-handed alpha
Helix 65	AH2	D	1220	1223	Right-handed 310
Helix 66	AH3	D	1224	1238	Right-handed alpha
Helix 67	AH4	D	1239	1259	Right-handed alpha
Helix 68	AH5	D	1262	1269	Right-handed alpha
Helix 69	AH6	D	1295	1298	Right-handed 310
Helix 70	AH7	D	1299	1304	Right-handed alpha
Helix 71	AH8	D	1307	1315	Right-handed alpha
Helix 72	AH9	D	1319	1337	Right-handed alpha
Helix 73	AI1	D	1340	1345	Right-handed alpha
Helix 74	AI2	D	1346	1352	Right-handed 310
Helix 75	AI3	D	1356	1358	Right-handed 310
Helix 76	AI4	D	1359	1374	Right-handed alpha
Helix 77	AI5	D	1381	1393	Right-handed alpha
Helix 78	AI6	D	1411	1417	Right-handed alpha
Helix 79	AI7	D	1423	1433	Right-handed alpha
Helix 80	AI8	D	1447	1463	Right-handed alpha
Helix 81	AI9	D	1470	1486	Right-handed alpha
Helix 82	AJ1	D	1486	1491	Right-handed alpha
Helix 83	AJ2	D	1503	1525	Right-handed alpha
Helix 84	AJ3	A	39	49	Right-handed alpha
Helix 85	AJ4	A	109	111	Right-handed 310
Helix 86	AJ5	A	123	133	Right-handed alpha
Helix 87	AJ6	A	150	154	Right-handed 310
Helix 88	AJ7	A	157	170	Right-handed alpha
Helix 89	AJ8	A	171	205	Right-handed alpha
Helix 90	AJ9	A	1032	1078	Right-handed alpha
Helix 91	AK1	A	1080	1090	Right-handed alpha
Helix 92	AK2	A	1133	1152	Right-handed alpha
Helix 93	AK3	A	1167	1182	Right-handed alpha
Helix 94	AK4	A	1194	1199	Right-handed alpha
Helix 95	AK5	C	38	49	Right-handed alpha
Helix 96	AK6	C	59	64	Right-handed alpha
Helix 97	AK7	C	117	128	Right-handed alpha
Helix 98	AK8	C	151	163	Right-handed alpha
Helix 99	AK9	C	165	238	Right-handed alpha
Helix 100	AL1	C	951	967	Right-handed alpha
Helix 101	AL2	C	973	1036	Right-handed alpha
Helix 102	AL3	C	1098	1117	Right-handed alpha
Helix 103	AL4	C	1132	1150	Right-handed alpha
Helix 104	AL5	C	1158	1163	Right-handed alpha
Helix 105	AL6	C	1186	1191	Right-handed alpha

There are 9 sheets in PDB entry 6YUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	616	617	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	257	259	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	21	first strand
Strand 2	A	4	12	anti-parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	100	107	anti-parallel
Strand 5	A	113	117	anti-parallel
Strand 6	A	120	121	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1157	1159	first strand
Strand 2	A	1188	1191	parallel
Strand 3	A	28	31	parallel
Strand 4	A	1203	1207	parallel
Strand 5	A	1218	1222	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1103	first strand
Strand 2	A	1116	1120	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	6	9	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	96	102	anti-parallel
Strand 5	C	107	110	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	1152	1155	parallel
Strand 3	C	1122	1125	parallel
Strand 4	C	138	139	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1040	1044	first strand
Strand 2	C	1079	1083	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1170	1174	first strand
Strand 2	C	1177	1181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUF