Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YUP entry

There are 4 chains in PDB entry 6YUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 92	CYS 685
C	LEU 92	CYS 685
D	GLY 31	PHE 452
E	GLY 31	PHE 452

There are 78 helices in PDB entry 6YUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	111	Right-handed alpha
Helix 2	AA2	A	141	148	Right-handed alpha
Helix 3	AA3	A	148	155	Right-handed alpha
Helix 4	AA4	A	189	203	Right-handed alpha
Helix 5	AA5	A	220	227	Right-handed alpha
Helix 6	AA6	A	230	236	Right-handed 310
Helix 7	AA7	A	289	307	Right-handed alpha
Helix 8	AA8	A	356	369	Right-handed alpha
Helix 9	AA9	A	370	372	Right-handed 310
Helix 10	AB1	A	389	394	Right-handed alpha
Helix 11	AB2	A	420	435	Right-handed alpha
Helix 12	AB3	A	452	457	Right-handed alpha
Helix 13	AB4	A	458	460	Right-handed 310
Helix 14	AB5	A	461	471	Right-handed alpha
Helix 15	AB6	A	503	507	Right-handed 310
Helix 16	AB7	A	514	519	Right-handed 310
Helix 17	AB8	A	537	544	Right-handed alpha
Helix 18	AB9	A	549	562	Right-handed alpha
Helix 19	AC1	A	562	567	Right-handed alpha
Helix 20	AC2	A	655	659	Right-handed 310
Helix 21	AC3	C	93	111	Right-handed alpha
Helix 22	AC4	C	141	148	Right-handed alpha
Helix 23	AC5	C	148	155	Right-handed alpha
Helix 24	AC6	C	189	203	Right-handed alpha
Helix 25	AC7	C	220	227	Right-handed alpha
Helix 26	AC8	C	230	236	Right-handed 310
Helix 27	AC9	C	289	307	Right-handed alpha
Helix 28	AD1	C	356	369	Right-handed alpha
Helix 29	AD2	C	370	372	Right-handed 310
Helix 30	AD3	C	389	394	Right-handed alpha
Helix 31	AD4	C	420	435	Right-handed alpha
Helix 32	AD5	C	452	457	Right-handed alpha
Helix 33	AD6	C	458	460	Right-handed 310
Helix 34	AD7	C	461	471	Right-handed alpha
Helix 35	AD8	C	503	507	Right-handed 310
Helix 36	AD9	C	514	519	Right-handed 310
Helix 37	AE1	C	537	544	Right-handed alpha
Helix 38	AE2	C	549	562	Right-handed alpha
Helix 39	AE3	C	562	567	Right-handed alpha
Helix 40	AE4	C	655	659	Right-handed 310
Helix 41	AE5	D	32	42	Right-handed alpha
Helix 42	AE6	D	50	60	Right-handed alpha
Helix 43	AE7	D	62	87	Right-handed alpha
Helix 44	AE8	D	107	116	Right-handed alpha
Helix 45	AE9	D	120	137	Right-handed alpha
Helix 46	AF1	D	147	167	Right-handed alpha
Helix 47	AF2	D	179	197	Right-handed alpha
Helix 48	AF3	D	220	230	Right-handed alpha
Helix 49	AF4	D	238	242	Right-handed 310
Helix 50	AF5	D	253	258	Right-handed alpha
Helix 51	AF6	D	259	276	Right-handed alpha
Helix 52	AF7	D	279	285	Right-handed alpha
Helix 53	AF8	D	288	297	Right-handed alpha
Helix 54	AF9	D	303	317	Right-handed alpha
Helix 55	AG1	D	352	361	Right-handed alpha
Helix 56	AG2	D	362	366	Right-handed 310
Helix 57	AG3	D	371	395	Right-handed alpha
Helix 58	AG4	D	414	427	Right-handed alpha
Helix 59	AG5	D	440	445	Right-handed alpha
Helix 60	AG6	E	32	42	Right-handed alpha
Helix 61	AG7	E	50	60	Right-handed alpha
Helix 62	AG8	E	62	87	Right-handed alpha
Helix 63	AG9	E	107	116	Right-handed alpha
Helix 64	AH1	E	120	137	Right-handed alpha
Helix 65	AH2	E	147	167	Right-handed alpha
Helix 66	AH3	E	179	197	Right-handed alpha
Helix 67	AH4	E	220	230	Right-handed alpha
Helix 68	AH5	E	238	242	Right-handed 310
Helix 69	AH6	E	253	258	Right-handed alpha
Helix 70	AH7	E	259	276	Right-handed alpha
Helix 71	AH8	E	279	285	Right-handed alpha
Helix 72	AH9	E	288	297	Right-handed alpha
Helix 73	AI1	E	303	317	Right-handed alpha
Helix 74	AI2	E	352	361	Right-handed alpha
Helix 75	AI3	E	362	366	Right-handed 310
Helix 76	AI4	E	371	395	Right-handed alpha
Helix 77	AI5	E	414	427	Right-handed alpha
Helix 78	AI6	E	440	445	Right-handed alpha

There are 18 sheets in PDB entry 6YUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	475	479	parallel
Strand 3	A	442	444	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	176	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	311	313	parallel
Strand 3	A	381	382	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	273	275	anti-parallel
Strand 3	A	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	402	403	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	650	first strand
Strand 2	A	592	597	anti-parallel
Strand 3	A	580	585	anti-parallel
Strand 4	A	569	572	anti-parallel
Strand 5	A	666	667	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	636	639	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	619	first strand
Strand 2	A	632	634	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	674	first strand
Strand 2	A	681	682	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	475	479	parallel
Strand 3	C	442	444	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	176	179	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	311	313	parallel
Strand 3	C	381	382	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	273	275	anti-parallel
Strand 3	C	264	266	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	402	403	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	650	first strand
Strand 2	C	592	597	anti-parallel
Strand 3	C	580	585	anti-parallel
Strand 4	C	569	572	anti-parallel
Strand 5	C	666	667	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	606	first strand
Strand 2	C	636	639	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	617	618	first strand
Strand 2	C	633	634	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	674	first strand
Strand 2	C	681	682	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUP