Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YUQ entry

There are 2 chains in PDB entry 6YUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 245
B
 MET 1GLN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6YUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 4Right-handed 310
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
87 101Right-handed alpha
Helix 4
AA4
A
104 106Right-handed 310
Helix 5
AA5
A
114 128Right-handed alpha
Helix 6
AA6
A
140 147Right-handed alpha
Helix 7
AA7
A
149 158Right-handed alpha
Helix 8
AA8
A
160 162Right-handed 310
Helix 9
AA9
A
163 173Right-handed alpha
Helix 10
AB1
A
173 181Right-handed alpha
Helix 11
AB2
A
198 215Right-handed alpha
Helix 12
AB3
A
229 245Right-handed alpha
Helix 13
AB4
B
1 4Right-handed 310
Helix 14
AB5
B
51 57Right-handed alpha
Helix 15
AB6
B
71 75Right-handed 310
Helix 16
AB7
B
87 101Right-handed alpha
Helix 17
AB8
B
104 106Right-handed 310
Helix 18
AB9
B
114 128Right-handed alpha
Helix 19
AC1
B
140 149Right-handed alpha
Helix 20
AC2
B
149 158Right-handed alpha
Helix 21
AC3
B
160 173Right-handed alpha
Helix 22
AC4
B
173 181Right-handed alpha
Helix 23
AC5
B
198 215Right-handed alpha
Helix 24
AC6
B
229 245Right-handed alpha
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There are 2 sheets in PDB entry 6YUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
22 27anti-parallel
Strand 4
A
60 65anti-parallel
Strand 5
A
30 37parallel
Strand 6
A
108 113parallel
Strand 7
A
131 135parallel
Strand 8
A
189 195parallel
Strand 9
A
220 224parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
22 27anti-parallel
Strand 4
B
61 65anti-parallel
Strand 5
B
33 37parallel
Strand 6
B
108 113parallel
Strand 7
B
131 135parallel
Strand 8
B
189 195parallel
Strand 9
B
220 224parallel
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