Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YUW entry

There is 1 chain in PDB entry 6YUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 87GLY 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6YUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 143Right-handed alpha
Helix 2
AA2
A
144 147Right-handed 310
Helix 3
AA3
A
159 163Right-handed 310
Helix 4
AA4
A
203 217Right-handed alpha
Helix 5
AA5
A
218 223Right-handed 310
Helix 6
AA6
A
232 253Right-handed alpha
Helix 7
AA7
A
286 299Right-handed alpha
Helix 8
AA8
A
303 311Right-handed alpha
Helix 9
AA9
A
314 319Right-handed 310
Helix 10
AB1
A
320 325Right-handed alpha
Helix 11
AB2
A
326 328Right-handed 310
Helix 12
AB3
A
341 347Right-handed alpha
Helix 13
AB4
A
357 376Right-handed alpha
Helix 14
AB5
A
407 418Right-handed alpha
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There are 3 sheets in PDB entry 6YUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
176 180anti-parallel
Strand 5
A
119 124parallel
Strand 6
A
225 231parallel
Strand 7
A
258 264parallel
Strand 8
A
332 335parallel
Strand 9
A
381 383parallel
Strand 10
A
435 437parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
387 388parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
405 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il