Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YUZ entry

There are 2 chains in PDB entry 6YUZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 92	CYS 685
C	LEU 92	CYS 685

There are 41 helices in PDB entry 6YUZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	111	Right-handed alpha
Helix 2	AA2	A	141	148	Right-handed alpha
Helix 3	AA3	A	148	155	Right-handed alpha
Helix 4	AA4	A	189	203	Right-handed alpha
Helix 5	AA5	A	220	227	Right-handed alpha
Helix 6	AA6	A	230	236	Right-handed 310
Helix 7	AA7	A	289	307	Right-handed alpha
Helix 8	AA8	A	356	369	Right-handed alpha
Helix 9	AA9	A	370	372	Right-handed 310
Helix 10	AB1	A	389	394	Right-handed alpha
Helix 11	AB2	A	420	435	Right-handed alpha
Helix 12	AB3	A	452	457	Right-handed alpha
Helix 13	AB4	A	458	460	Right-handed 310
Helix 14	AB5	A	461	471	Right-handed alpha
Helix 15	AB6	A	503	507	Right-handed 310
Helix 16	AB7	A	514	519	Right-handed 310
Helix 17	AB8	A	537	544	Right-handed alpha
Helix 18	AB9	A	549	562	Right-handed alpha
Helix 19	AC1	A	562	567	Right-handed alpha
Helix 20	AC2	A	625	629	Right-handed 310
Helix 21	AC3	A	655	659	Right-handed 310
Helix 22	AC4	C	93	111	Right-handed alpha
Helix 23	AC5	C	141	148	Right-handed alpha
Helix 24	AC6	C	148	155	Right-handed alpha
Helix 25	AC7	C	189	203	Right-handed alpha
Helix 26	AC8	C	220	227	Right-handed alpha
Helix 27	AC9	C	230	236	Right-handed 310
Helix 28	AD1	C	289	307	Right-handed alpha
Helix 29	AD2	C	356	369	Right-handed alpha
Helix 30	AD3	C	370	372	Right-handed 310
Helix 31	AD4	C	389	394	Right-handed alpha
Helix 32	AD5	C	420	435	Right-handed alpha
Helix 33	AD6	C	452	457	Right-handed alpha
Helix 34	AD7	C	458	460	Right-handed 310
Helix 35	AD8	C	461	471	Right-handed alpha
Helix 36	AD9	C	503	507	Right-handed 310
Helix 37	AE1	C	514	519	Right-handed 310
Helix 38	AE2	C	537	544	Right-handed alpha
Helix 39	AE3	C	549	562	Right-handed alpha
Helix 40	AE4	C	562	567	Right-handed alpha
Helix 41	AE5	C	655	659	Right-handed 310

There are 16 sheets in PDB entry 6YUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	475	479	parallel
Strand 3	A	442	444	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	176	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	311	313	parallel
Strand 3	A	381	382	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	273	275	anti-parallel
Strand 3	A	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	402	403	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	634	first strand
Strand 2	A	617	623	anti-parallel
Strand 3	A	645	650	anti-parallel
Strand 4	A	592	597	anti-parallel
Strand 5	A	580	585	anti-parallel
Strand 6	A	569	572	anti-parallel
Strand 7	A	666	667	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	606	first strand
Strand 2	A	636	639	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	674	first strand
Strand 2	A	681	682	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	475	479	parallel
Strand 3	C	442	444	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	176	179	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	311	313	parallel
Strand 3	C	381	382	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	273	275	anti-parallel
Strand 3	C	264	266	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	402	403	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	634	first strand
Strand 2	C	617	623	anti-parallel
Strand 3	C	645	650	anti-parallel
Strand 4	C	592	597	anti-parallel
Strand 5	C	580	585	anti-parallel
Strand 6	C	569	572	anti-parallel
Strand 7	C	666	667	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	606	first strand
Strand 2	C	636	639	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	674	first strand
Strand 2	C	681	682	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YUZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YUZ