Analysis of interatomic Contacts of Structural Units in PDB entry:
6YV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YV8 entry

There are 2 chains in PDB entry 6YV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 356
B
 LEU 2GLU 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6YV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 30Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
71 73Right-handed 310
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
114 125Right-handed alpha
Helix 6
AA6
A
144 153Right-handed alpha
Helix 7
AA7
A
179 192Right-handed alpha
Helix 8
AA8
A
206 213Right-handed alpha
Helix 9
AA9
A
221 233Right-handed alpha
Helix 10
AB1
A
253 274Right-handed alpha
Helix 11
AB2
A
282 295Right-handed alpha
Helix 12
AB3
A
295 313Right-handed alpha
Helix 13
AB4
A
317 329Right-handed alpha
Helix 14
AB5
A
331 355Right-handed alpha
Helix 15
AB6
B
3 31Right-handed alpha
Helix 16
AB7
B
54 67Right-handed alpha
Helix 17
AB8
B
71 73Right-handed 310
Helix 18
AB9
B
87 99Right-handed alpha
Helix 19
AC1
B
114 124Right-handed alpha
Helix 20
AC2
B
144 153Right-handed alpha
Helix 21
AC3
B
179 192Right-handed alpha
Helix 22
AC4
B
206 213Right-handed alpha
Helix 23
AC5
B
221 233Right-handed alpha
Helix 24
AC6
B
253 274Right-handed alpha
Helix 25
AC7
B
282 295Right-handed alpha
Helix 26
AC8
B
295 313Right-handed alpha
Helix 27
AC9
B
316 328Right-handed alpha
Helix 28
AD1
B
331 356Right-handed alpha
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There are 4 sheets in PDB entry 6YV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
75 81parallel
Strand 3
A
45 51parallel
Strand 4
A
130 133parallel
Strand 5
A
202 205anti-parallel
Strand 6
A
158 162anti-parallel
Strand 7
A
236 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
244 246parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
75 82parallel
Strand 3
B
45 51parallel
Strand 4
B
130 133parallel
Strand 5
B
202 205anti-parallel
Strand 6
B
158 162anti-parallel
Strand 7
B
236 238parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
244 246parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il